Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq236 104 3e-17 seq413 100 3e-16 seq1676 95.1 1e-14 seq313 95.1 1e-14 seq1088 91.5 2e-13 seq1721 89.7 6e-13 seq1043 86.0 7e-12 seq919 86.0 7e-12 >seq236 Length=489515 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 ||| || || | || || ||| |||||| | |||||||| | |||| ||| || Sbjct 435834 GAAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTAACTTAACAAAGTTTACAGC 435775 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 ||||||||||||||| || || || | ||||| |||||||||| | | ||||||||||| Sbjct 435774 ATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATTGCATCTTC 435715 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || | || | ||||||||| || || ||||| ||| |||| Sbjct 435714 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 435670 >seq413 Length=437716 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 |||||| || | || || || | |||||| || ||||||||| | |||| ||||| Sbjct 218048 GAAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTAATTTAACAAAGTTAACGGC 217989 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||| || ||||| || || || | ||||| |||||||| | | | || |||||||| Sbjct 217988 ATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATCTTC 217929 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || | |||| ||||| || ||||| ||||| ||| |||| Sbjct 217928 TAAAGTTTCACGGTTGAGAACGTTAACGTTAAGATGGTGAGCACC 217884 >seq1676 Length=585574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 |||||| || | || || ||| |||||| | || |||||| | |||| ||||| Sbjct 517400 GAAAGTACGGGCAATGACTTCCTTTTGTTGAGCTGGTGTTAATTTAACAAAGTTAACGGC 517459 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||| |||||||| || || || | ||||| |||||||||| | | || |||||||| Sbjct 517460 ATAACCAGAAACACGAATCGTAAGGTTTGGATAGTTTTCTGGATGAGCCATGGCATCTTC 517519 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGA 66113 | || | || | ||||||||| ||||| || || ||| Sbjct 517520 TAAAGTTTCACGCTTAAGAACATTGACGTTAAGGTGGTGA 517559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 |||||| || | || || ||| |||||| | || |||||| | |||| ||||| Sbjct 528057 GAAAGTACGGGCAATGACTTCCTTTTGTTGAGCTGGTGTTAATTTAACAAAGTTAACGGC 527998 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||| |||||||| || || || | ||||| |||||||||| | | || |||||||| Sbjct 527997 ATAACCAGAAACACGAATCGTAAGGTTTGGATAGTTTTCTGGATGAGCCATGGCATCTTC 527938 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGA 66113 | || | || | ||||||||| ||||| || || ||| Sbjct 527937 TAAAGTTTCACGCTTAAGAACATTGACGTTAAGGTGGTGA 527898 >seq313 Length=466657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 |||||| || | || || ||| |||||| | |||||||| | |||| ||||| Sbjct 153348 GAAAGTACGAGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACAAAGTTGACGGC 153407 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||| |||||||| || || || | ||||| ||||| |||| | | || |||||||| Sbjct 153408 ATAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCAGGATGAGCCATAGCATCTTC 153467 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || | || | ||||||||| || || ||||| ||| |||| Sbjct 153468 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 153512 >seq1088 Length=861023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 ||| || || | || || ||| |||||| | |||||||| | |||| || || Sbjct 440256 GAAGGTACGGGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACAAAGTTAACAGC 440197 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||||||||||| || || || | ||||| |||||||||| | | || |||||||| Sbjct 440196 GTAACCGGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 440137 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || | || | ||||||||| || || ||||| ||| |||| Sbjct 440136 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 440092 >seq1721 Length=570012 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 65979 TGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGT 66038 ||||| | ||||||||| | |||| || || ||||| |||||||| ||||||| Sbjct 380145 TGTTGGGCTGGAGTTAATTTAACAAAGTTGACAGCGTAACCAGAAACACGAATGGTTAAG 380086 Query 66039 TGGGGATATTTTTCTGGATTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTT 66098 | ||||| |||||||| | | | ||||||||||| | ||| | || | ||||||||| Sbjct 380085 TTTGGATAGTTTTCTGGGTGAGCCATTGCATCTTCTAAGGTTTCACGCTTAAGAACATTA 380026 Query 66099 ACGTTGAGATGCTGACCACCTT 66120 || || ||||| || | |||| Sbjct 380025 ACATTAAGATGATGGGCTCCTT 380004 >seq1043 Length=1347342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 |||||| || | || || || | |||||| | || || | | | ||||| | || || Sbjct 863622 GAAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGC 863563 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 |||||| |||||||| ||||||| | |||||||||||||||| ||| || |||||||| Sbjct 863562 ATAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTC 863503 >seq919 Length=344912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65954 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 66013 ||| || || | || || ||| |||||| | |||||||| | ||| || || Sbjct 162700 GAAGGTACGAGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACGAAGTTGACAGC 162641 Query 66014 ATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 66073 ||||| ||||||||||| || || | ||||| |||||||| | | | || |||||||| Sbjct 162640 GTAACCAGAAACACGGATAGTAAGGTTTGGATAGTTTTCTGGGTGAGCCATAGCATCTTC 162581 Query 66074 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | ||| | || | |||||| || ||||| ||||| ||| |||| Sbjct 162580 TAAGGTTTCACGCTTAAGAACGTTGACGTTAAGATGGTGAGCACC 162536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555350572429240