Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1454 84.2 2e-11 >seq1454 Length=643854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | | ||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 189716 CCTCCACGAAGACGTAAGACTAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAG-A 189774 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || | |||||||| | |||| | ||| || ||||| || Sbjct 189775 AAGAGTACGACCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCTGGTGG 189834 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || ||| || ||| | | | |||||||| | ||| || Sbjct 189835 AATACCTTCCTTATCTTGAATCTTAGCCTTAACATTTTCAATGGTATCAGAAGATTCAAC 189894 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || ||||| || | ||| || |||||||| ||||| Sbjct 189895 TTCTAAGGTGATAGTCTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 189942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421241861255819