Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq413 138 1e-27 seq922 136 5e-27 seq1321 118 1e-21 >seq413 Length=437716 Score = 138 bits (152), Expect = 1e-27 Identities = 246/354 (69%), Gaps = 10/354 (3%) Strand=Plus/Minus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||| |||| ||| | ||| | ||||||| |||| || || ||||| Sbjct 66117 TACCAGCTGGATTCCATGCAGACATAATAATTCTTCTATCAGTTGGCTTA-TTAATAATT 66059 Query 7115 TTGTTATAATTATTTGTAAT-TGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || | | | || || |||||| | || || ||| ||||| || ||||||| | Sbjct 66058 TTATCAATAACATCACGAAGCTGATCTTTTCCTTGTCCTGTATAATCTGTGTGACAATCT 65999 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 ||||| |||||||||||||| | |||||| | ||||| || || ||||||||||||||| Sbjct 65998 ATATATTTAGCTCCAAAATGACGCCATTGCCAACCATATATTGGTCCTAAATCACCTTCT 65939 Query 7234 TCACGATGATTAAATCCTAATCGAT--TTAAATT--AGATTTTGATCCATAAGCATCCCA 7289 || | | | | || |||| | || ||||| || || |||| | | ||||| Sbjct 65938 TCTCTTTCAGTTAAACCTATTTTATCAAGAAATTCACGA----GAACCATTACCTTCCCA 65883 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 ||||| ||| ||||||||||| | || || ||| ||| | | |||||| || Sbjct 65882 TATATGAACACCTTTTTTTGATAGAATTTTTCCATCAGTATCACCTCTTAAGAACCAAAA 65823 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | ||| ||| | | || | |||| | |||||| || || |||| ||||| Sbjct 65822 TAATTCCTCTGCAACACCTCTAAAAAAAACTCTTTTCGTTGTTAATAGTGGGAA 65769 Score = 111 bits (122), Expect = 2e-19 Identities = 173/248 (70%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 6806 TTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTAT 6865 ||| |||||||| || ||||| ||||||| ||||||||| | ||| || | || Sbjct 66574 TTATTTGTTCTTGTAGAGCTTCAATATGATTATTATAAATATGTGTATCACCCATATCAT 66515 Query 6866 GAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCAT 6925 ||||||| || ||||| || ||| | |||||||||| | | |||||||| | || Sbjct 66514 GAATAAAAGTTCCAGGTTTAATTCCAATTACATGAGCAATTATACAAGTTAATAAAGAAT 66455 Query 6926 AAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGAC 6985 || ||| | ||||||||| ||||||||||| | ||| ||||| |||||| || Sbjct 66454 AACTAGCAATATTAAAAGGAACACCTAATCCAACATCACAAGATCTCTGATAAAGGATAC 66395 Query 6986 AAGATA---AAATAT---------TGTCTATAGCATAAAATTGACACAATACATGACATG 7033 |||||| || || || | | ||||||| ||||| || | |||||||| Sbjct 66394 AAGATAATGAAGGATCCGTTTCTGGGTTTGAAACATAAAACTGACAAAACATATGACATG 66335 Query 7034 GAGGTAAA 7041 | |||||| Sbjct 66334 GTGGTAAA 66327 >seq922 Length=344319 Score = 136 bits (150), Expect = 5e-27 Identities = 213/301 (71%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| | || | ||||| || ||| ||||||| | |||||||||| || Sbjct 53158 AAATTTGAAGATTTAGGTATTGGTGGTCTCGATAAAGAATTTAGTGCTATTTTCAGAAGA 53099 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGA-AATAATaaaaaaaTTAGGCTGTAAACATAT 164516 || ||||||||| | | |||| | | ||| | |||||||||| | |||| Sbjct 53098 GCTTTTGCTTCTCG-TATTTTCCCACCATCAATTGTCGAAAAATTAGGTATTCAACACTG 53040 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| |||||| || ||||||| || ||| |||||| ||||||||||| || || Sbjct 53039 CAAAGGTATTTTACTATATGGACCGCCAGGTACCGGTAAGACATTAATGGCACGTCAGAT 52980 Query 164577 TGCTCAAGCTTTTAAATCGCG---ACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 || | || |||| | || ||| ||| ||||||||||||| ||| | || || Sbjct 52979 TGGTAAAATGCTTAATGCACGGGAACCAATTA---TTGTTAATGGTCCAGAAATTTTAAA 52923 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||||||| ||| | || |||| ||| | |||||||| ||| || |||||| |||| Sbjct 52922 TAAATATGTTGGTCAATCTGAAGAAAATATCAGAAAGTTATTTGCTGAAGCTGAAAAAGA 52863 Query 164694 A 164694 | Sbjct 52862 A 52862 >seq1321 Length=689638 Score = 118 bits (130), Expect = 1e-21 Identities = 210/301 (70%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| | || | ||||| || ||| ||||||| | ||||||||| || Sbjct 152819 AAATTTGAAGATTTAGGTATTGGTGGTCTTGATAAAGAATTTAGTGCCATTTTCAGAAGA 152760 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGA-AATAATaaaaaaaTTAGGCTGTAAACATAT 164516 |||||||| || | | |||| | ||| | |||||||||| | | || Sbjct 152759 GCATTTGCATCACG-TATTTTCCCCCCTTCAATTGTTGAAAAATTAGGTATTCAGCACTG 152701 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| ||||||||| |||| || || ||| ||||| ||||||||||| || || Sbjct 152700 TAAAGGTATTTTATTATATGGTCCACCAGGTACTGGTAAGACATTAATGGCACGTCAAAT 152641 Query 164577 TGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAA 164633 || | ||| | | ||| || || || | | ||||||||||||| ||| | ||||| Sbjct 152640 TGGT-AAGATGCTTAATGCTCGAGAACCAATTA--TTGTTAATGGTCCAGAAATTTTGAA 152584 Query 164634 CAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGA 164693 |||||||| ||| | || |||| ||| ||||||| || ||| || |||||| |||| Sbjct 152583 TAAATATGTTGGTCAATCTGAAGAAAATATTAGAAAATTATTTGCAGAAGCTGAAAAAGA 152524 Query 164694 A 164694 | Sbjct 152523 A 152523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595858451360400