Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq932 150 3e-32 seq1020 141 1e-29 >seq932 Length=1449073 Score = 150 bits (166), Expect = 3e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || || || || |||||||| |||||||| || ||||||||||| ||||||||| | ||| Sbjct 560984 GGTATTACTAAACCAGCTATTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATTTCT 560925 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || | | |||||||| | ||||| |||| | ||| ||||||| | | |||||| Sbjct 560924 GGTCTTATTTATGAAGAAACTCGTGGTGTTCTTAAGGTCTTCCTTGAAAACGTTATTAGA 560865 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 ||||| || ||| || || || ||||| | |||||||| || ||| | ||| | || Sbjct 560864 GATGCAGTCACCTACACTGAACATGCTAAGAGAAAGACTGTTACTTCCTTAGATGTTGTA 560805 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || |||||||| |||| |||| |||||||| ||||| Sbjct 560804 TATGCCCTTAAGCGTCAAGGTCGTACTCTTTACGGTTTTGGTGGTTAA 560757 >seq1020 Length=229247 Score = 141 bits (156), Expect = 1e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || || || ||||||||||| |||||||| |||||||||||||| ||||||||| ||||| Sbjct 225671 GGTATTACTAAGCCAGCTATTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCT 225730 Query 16532 GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCAT 16591 || | | |||||||| | ||||| |||| | ||| ||||||| | | || || Sbjct 225731 GGTCTTATTTATGAAGAAACTCGTGGTGTTCTTAAGGTCTTCCTTGAAAATGTCATTAGA 225790 Query 16592 GATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTC 16651 ||||| | ||| || || || ||||| | |||||||| || || | ||| | || Sbjct 225791 GATGCAGTTACCTACACTGAACATGCTAAGAGAAAGACTGTTACTTCTTTAGATGTTGTT 225850 Query 16652 TATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || | || |||||||| |||| |||| |||||||| ||||| Sbjct 225851 TACGCTCTTAAGCGTCAAGGTCGTACTCTTTACGGTTTTGGTGGTTAA 225898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073536875567