Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1343 102 1e-16 >seq1343 Length=682584 Score = 102 bits (112), Expect = 1e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 193792 AGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACAC 193851 |||| ||||| || ||||| |||||| |||| || | ||||| | |||| |||| Sbjct 152328 AGGCTTCTACAAGTGAACTTTATGGTAAAGTTCAAGAAATTCCACAAAATGAAAAAACAC 152269 Query 193852 CATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGA 193911 |||| ||||||| ||||||||||||||||| || || |||| |||||||| | | Sbjct 152268 CATTCTATCCACGTTCTCCTTATGGTGTAGCTAAATTATATGCCTATTGGATTGTAGTTA 152209 Query 193912 ATTATCGTGAGTCATAT----GGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAA 193967 |||||||||| | ||| | || || || |||||| | || ||||| ||| Sbjct 152208 ATTATCGTGAAGCCTATAATATGTTTTCA----TGTAATGGTATATTATTTAATCATGAA 152153 Query 193968 TCTCCAAGAAGAGGT 193982 ||||||||||||| Sbjct 152152 AGTCCAAGAAGAGGT 152138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807536838213640