Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq236 100 3e-16 seq1721 86.0 7e-12 seq1088 86.0 7e-12 seq1043 82.4 8e-11 seq919 82.4 8e-11 >seq236 Length=489515 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65603 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 65662 ||| || || | || || ||| |||||| | |||||||| | |||| ||| || Sbjct 435834 GAAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTAACTTAACAAAGTTTACAGC 435775 Query 65663 ATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 65722 ||| ||||||||||| || || || | ||||| |||||||||| | | ||||||||||| Sbjct 435774 ATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATTGCATCTTC 435715 Query 65723 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 65767 | || | || | ||||||||| || || ||||| ||| |||| Sbjct 435714 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 435670 >seq1721 Length=570012 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 65628 TGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGCATAGCCGGAAACACGGATGGTTAGC 65687 ||||| | ||||||||| | |||| || || || || |||||||| ||||||| Sbjct 380145 TGTTGGGCTGGAGTTAATTTAACAAAGTTGACAGCGTAACCAGAAACACGAATGGTTAAG 380086 Query 65688 TGGGGATATTTTTCTGGATTAACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTT 65747 | ||||| |||||||| | | | ||||||||||| | ||| | || | ||||||||| Sbjct 380085 TTTGGATAGTTTTCTGGGTGAGCCATTGCATCTTCTAAGGTTTCACGCTTAAGAACATTA 380026 Query 65748 ACGTTGAGATGCTGACCACCTT 65769 || || ||||| || | |||| Sbjct 380025 ACATTAAGATGATGGGCTCCTT 380004 >seq1088 Length=861023 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65603 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 65662 ||| || || | || || ||| |||||| | |||||||| | |||| || || Sbjct 440256 GAAGGTACGGGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACAAAGTTAACAGC 440197 Query 65663 ATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 65722 || ||||||||||| || || || | ||||| |||||||||| | | || |||||||| Sbjct 440196 GTAACCGGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGATGAGCCATAGCATCTTC 440137 Query 65723 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 65767 | || | || | ||||||||| || || ||||| ||| |||| Sbjct 440136 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 440092 >seq1043 Length=1347342 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 65603 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 65662 |||||| || | || || || | |||||| | || || | | | ||||| | || || Sbjct 863622 GAAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGC 863563 Query 65663 ATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 65722 ||| || |||||||| ||||||| | |||||||||||||||| ||| || |||||||| Sbjct 863562 ATAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTC 863503 >seq919 Length=344912 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65603 GAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACGGC 65662 ||| || || | || || ||| |||||| | |||||||| | ||| || || Sbjct 162700 GAAGGTACGAGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACGAAGTTGACAGC 162641 Query 65663 ATAGCCGGAAACACGGATGGTTAGCTGGGGATATTTTTCTGGATTAACGATTGCATCTTC 65722 || || ||||||||||| || || | ||||| |||||||| | | | || |||||||| Sbjct 162640 GTAACCAGAAACACGGATAGTAAGGTTTGGATAGTTTTCTGGGTGAGCCATAGCATCTTC 162581 Query 65723 CAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 65767 | ||| | || | |||||| || ||||| ||||| ||| |||| Sbjct 162580 TAAGGTTTCACGCTTAAGAACGTTGACGTTAAGATGGTGAGCACC 162536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553341018122520