Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq413 87.8 5e-12 >seq413 Length=437716 Score = 87.8 bits (96), Expect = 5e-12 Identities = 171/249 (69%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 111413 AAAAAA--TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGT 111470 |||||| ||| | || ||||| || ||||| || ||||| ||||| ||| | | ||| Sbjct 65865 AAAAAAGGTGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGGT 65924 Query 111471 CTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTT 111530 | || | |||||||||||| | |||||| | || || | |||||||| || ||| Sbjct 65925 TTAACTGAAAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTT 65984 Query 111531 GGTGCAGACTACAAAACCATGCACGACTCATATGATTC---ACAGGGAACTGATCAATTA 111587 || || | || | | || | || || || || | ||| |||| ||||| | Sbjct 65985 GGAGCTAAATATATA--GATTGTC-ACACAGATTATACAGGACAAGGAAAAGATCAGCTT 66041 Query 111588 CAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCA 111647 | |||| |||||| |||||| || || |||||| | | | ||||||||| |||| Sbjct 66042 CGTGATGTTATTGATAAAATTATTAATAAGCCAACTGATAGAAGAATTATTATGTCTGCA 66101 Query 111648 TGGAACCCA 111656 ||||| ||| Sbjct 66102 TGGAATCCA 66110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303323224122458