Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq952 116 3e-21 seq1521 95.1 1e-14 seq1246 91.5 1e-13 >seq952 Length=293713 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| || || | ||||| || || ||||||||||||||||||||| Sbjct 167335 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCGGAA 167276 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||||| || ||| |||| | ||| || ||||| || ||| Sbjct 167275 AGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGG 167216 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | || |||| | || | ||| |||| ||| |||| Sbjct 167215 ATACCTTCCTTATC-TTGAATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCGAC 167157 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 167156 CTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACAAAAATTTGCAT 167109 >seq1521 Length=627264 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| || || | ||||| || || |||||||||||||||||||| Sbjct 324350 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCAGAA 324291 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||||| || || |||| | ||| || ||||| || || Sbjct 324290 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGA 324231 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || |||| | || | ||| |||| ||| || | Sbjct 324230 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 324171 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || ||||| || || || ||||| Sbjct 324170 TCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 324124 >seq1246 Length=69101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| || || | ||| | || || || ||||||||||||||||| Sbjct 26291 CCACCACGTAAACGAAGTACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCAGAA 26232 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||||| || || |||||||||| || || || || || Sbjct 26231 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 26172 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||||| | || | ||| || | || || | Sbjct 26171 ATACCTTCCTTATCTTGAATCTTGGCCTTGACATTTTCAATAGTGTCAGAAGATTCAACT 26112 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||||| ||| ||||| |||| |||||| || ||||||| Sbjct 26111 TCTAAGGTAATGGTCTTACCTGTTAAAGTTTTAACAAAAATCT 26069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002067608960