Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq413 87.8 2e-12 seq236 87.8 2e-12 >seq413 Length=437716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 60631 GAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAA---AGCGAAC 60687 ||| |||||||| ||||| || | || || || ||||| | | |||| || ||| Sbjct 218048 GAAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTA---ATTTAACAAAGTTAAC 217992 Query 60688 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60747 |||||||| || ||||| || || || | ||||| ||||| || || | ||||| Sbjct 217991 GGCATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATC 217932 Query 60748 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60795 ||| | ||||||||| |||||||||||||| || || ||| |||| Sbjct 217931 TTCTAAAGTTTCACGGTTGAGAACGTTAACGTTAAGATGGTGAGCACC 217884 >seq236 Length=489515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 60631 GAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAA---AGCGAAC 60687 |||||||||||| ||||| || || |||| ||||| | | |||| || || Sbjct 435834 GAAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTA---ACTTAACAAAGTTTAC 435778 Query 60688 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60747 ||||||||||| ||||| || || || | ||||| ||||| ||||| | |||||| Sbjct 435777 AGCATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATTGCATC 435718 Query 60748 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60795 ||| | ||||||||| ||||| ||||| || || || ||| |||| Sbjct 435717 TTCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 435670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530707932754000