Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1343 86.0 1e-11 >seq1343 Length=682584 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 68427 TATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCT 68486 ||||| ||||| ||||||||||| || | ||||| || || || ||||| || ||| Sbjct 152308 TATGGTAAAGTTCAAGAAATTCCACAAAATGAAAAAACACCATTCTATCCACGTTCTCCT 152249 Query 68487 TACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTA-AAAATTACCGTGAGTCGTATAA 68545 || ||||| || || || || || |||||||| |||| ||||| ||||| | ||||| Sbjct 152248 TATGGTGTAGCTAAATTATATGCCTATTGGAT-TGTAGTTAATTATCGTGAAGCCTATAA 152190 Query 68546 CATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 68596 |||| | ||| || || | || ||||| || ||||| | ||||| Sbjct 152189 TATGTTTTCATGTAATGGTATATTATTTAATCATGAAAGTCCAAGAAGAGG 152139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102854296347650