Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1246 87.8 2e-12 seq768 87.8 2e-12 >seq1246 Length=69101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | || | ||| | ||||| ||||||||||| |||||||| Sbjct 26291 CCACCACGTAAACGAAGTACAAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCAGAA 26232 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| || || || || |||| || || || ||||| || || Sbjct 26231 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 26172 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || || || ||||| | ||| | ||||| | | || ||| Sbjct 26171 ATACCTTCCTTATCTTGAATCTTGGCCTTGACATTTTCAATAGTGTCAGAAGATTCAACT 26112 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 127109 || | ||| | || || || || | |||||| |||||||||| Sbjct 26111 TCTAAGGTAATGGTCTTACCTGTTAAAGTTTTAACAAAAATCT 26069 >seq768 Length=375019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| ||||| || | || | ||| | ||||| |||||||||||||||||||| Sbjct 192641 CCACCACGTAAACGAAGAACAAGATGAAGGGTAGATTCTTTTTGAATATTGTAATCAGAA 192700 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || |||| || || || ||||| || || Sbjct 192701 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGA 192760 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || || || ||||| | ||| | ||||| | | || ||| Sbjct 192761 ATACCTTCCTTATCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGATTCAACT 192820 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 127109 || | ||| | || || || || | ||||| || ||||||| Sbjct 192821 TCTAAGGTAATGGTCTTACCAGTTAATGTTTTAACGAAAATCT 192863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489988300560