Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq925 100 1e-16 >seq925 Length=338264 Score = 100 bits (110), Expect = 1e-16 Identities = 357/542 (66%), Gaps = 32/542 (6%) Strand=Plus/Minus Query 17970 ATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGGAGCAGCTCTT 18029 ||||| |||||||| ||||||||| || || ||||||||| ||||| |||| Sbjct 95600 ATTGTTGAACCAACTAGTGGTAATACCGGTATTGGTTTAGCTTCTGTTGGCCGAGCTAAG 95541 Query 18030 GGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAGACAAATTA-- 18087 || ||| || | || ||| | ||||| | ||||| |||||| | |||||| Sbjct 95540 GGTTATCGTGTCATCATCGTATTACCAGATAGTATGTCTATTGAACGTCGT-AAATTAAT 95482 Query 18088 TCCGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAAAGGTGCTA 18147 | |||| ||||| | |||||| | || |||| || ||| ||| |||| ||| Sbjct 95481 TAAAGGCTTC-GGTGCCGAATTAGTTCTTACTCCTGGTAAATTAGGTATGCAAGGAGCTG 95423 Query 18148 TCGCTAAAGCCAAAGAAATTGCCAAAGATATT---AACGGATTTATACCAATGCAATTTG 18204 | | |||||| || |||||||| || | | || | |||||| || |||||| Sbjct 95422 TTGATAAAGCTAATGAAATTGCTGCTGAAAATCCAAATGCATTTATTCCTCAACAATTTA 95363 Query 18205 AGAACTTCTGGAATCCTACAGCTCATTTTGATAACACAG---CTTTTGAAATCATTGATG 18261 | || | ||| ||| ||| || | || | | || || |||| ||| || Sbjct 95362 ATAA-TCCTG-----CTAATGCTGCTTATCATGAAAGAGTTACTGGTGAAGAAATT--TG 95311 Query 18262 AACTTA--CTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAACTGGTGG 18319 | | | || || || ||| | ||| ||||| ||||| ||||| || || || Sbjct 95310 GAATGATGCTGAA---GGAAAAATT---GATTACTTTGTTGCAGGTGTTGGTACAGGAGG 95257 Query 18320 CACTATTACTGGAGCAGGTCATTCACTCAAAGAAGAATT-TCCTAGCATTAAAATTGTTG 18378 || || | |||| |||| | | | |||||| || ||| | ||||| ||||||| Sbjct 95256 TACCGTTTCAGGAGTAGGTGCTGCTTT-AAAGAAACATAATCCAAATATTAAGATTGTTG 95198 Query 18379 GAGTTGAATCAGCAGAATCACCAGTACTTAGTGGA--GGAGAACCTGGACCACATAAGAT 18436 || ||| || |||| |||||| || ||| | | || || ||||||||||||| || Sbjct 95197 CTGTGGAACCATCAGATTCACCATTA-TTA-TCCACTGGTAAAGCTGGACCACATAAAAT 95140 Query 18437 TCAAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATATGGATATCATTGATGAAAT 18496 |||||| || || |||| ||||| ||| | | || |||| | ||||||||||| Sbjct 95139 TCAAGGAATAGGTGCCAATTTTGTTCCAAAAAATTATCATCCGGATGTTATTGATGAAAT 95080 Query 18497 CA 18498 || Sbjct 95079 CA 95078 Score = 100 bits (110), Expect = 1e-16 Identities = 359/543 (66%), Gaps = 34/543 (6%) Strand=Plus/Plus Query 17970 ATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGGAGCAGCTCTT 18029 ||||| |||||||| ||||||||| || || ||||||||| ||||| |||| Sbjct 98047 ATTGTTGAACCAACTAGTGGTAATACCGGTATTGGTTTAGCTTCTGTTGGCCGAGCTAAG 98106 Query 18030 GGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAGACAAATTA-- 18087 || ||| || | || ||| | ||||| | ||||| |||||| | |||||| Sbjct 98107 GGTTATCATGTCATCATCGTATTACCAGATAGTATGTCTATTGAACGTCGT-AAATTAAT 98165 Query 18088 TCCGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAAAGGTGCTA 18147 | |||| ||||| | |||||| | || |||| || ||| ||| |||| ||| Sbjct 98166 TAAAGGCTTC-GGTGCCGAATTAGTTCTTACTCCTGGTAAATTAGGTATGCAAGGAGCTG 98224 Query 18148 TCGCTAAAGCCAAAGAAATTGCCAAAGATATT---AACGGATTTATACCAATGCAATTTG 18204 | | |||||| || |||||||| || | | || | |||||| || |||||| Sbjct 98225 TTGATAAAGCTAATGAAATTGCTGCTGAAAATCCAAATGCATTTATTCCTCAACAATTTA 98284 Query 18205 AGAACTTCTGG-AATCCTACAGCTCATTTTGATAAC---ACAGCTTTTGAAATCATTG-- 18258 | || | ||| ||| || ||| || ||| | || | | ||||| ||| Sbjct 98285 ATAA-TCCTGCTAATGCT---GCTTATCATGAAAGGGTTACTGGTGAAGAAAT--TTGGA 98338 Query 18259 ATGAACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAACTGGTG 18318 |||| | || || || ||| | ||| ||||| ||||| ||||| || || | Sbjct 98339 ATGA---TGCTGAA---GGAAAAATT---GATTACTTTGTTGCAGGTGTTGGTACAGGAG 98389 Query 18319 GCACTATTACTGGAGCAGGTCATTCACTCAAAGAAGAATT-TCCTAGCATTAAAATTGTT 18377 | || || | |||| |||| | | | |||||| || ||| | ||||| |||||| Sbjct 98390 GTACCGTTTCAGGAGTAGGTGCTGCTTT-AAAGAAACATAATCCAAATATTAAGATTGTT 98448 Query 18378 GGAGTTGAATCAGCAGAATCACCAGTACTTAGTGGA--GGAGAACCTGGACCACATAAGA 18435 | || ||| || |||| |||||| || ||| | | || || ||||||||||||| | Sbjct 98449 GCTGTGGAACCATCAGATTCACCATTA-TTA-TCCACTGGTAAAGCTGGACCACATAAAA 98506 Query 18436 TTCAAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATATGGATATCATTGATGAAA 18495 ||||||| || || |||| ||||| ||| | | || |||| | |||||||||| Sbjct 98507 TTCAAGGAATAGGTGCCAATTTTGTTCCAAAAAATTATCATCCGGATGTTATTGATGAAA 98566 Query 18496 TCA 18498 ||| Sbjct 98567 TCA 98569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192111050191608