Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq585 95.1 8e-15 seq1265 82.4 5e-11 >seq585 Length=8358 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||||||||| | | | | | |||| || |||||||| || |||| Sbjct 4094 TTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAA 4035 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | ||| || || || | || | |||||||| || ||||| ||| | | Sbjct 4034 AATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGGATTTTAGCTTTGACATT 3975 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||| | ||| || || | |||||| |||||||| |||||||| || || Sbjct 3974 TTCAATAGTATCTGAGGATTCAACTTCAAGAGTAATAGTTTTACCAGTTAAAGTCTTAAC 3915 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 3914 GAAGATTTGCAT 3903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || || || | |||| ||||||||| ||||| ||||| | Sbjct 4357 CCACCACGAAGACGTAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAA 4298 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || |||||||| || ||||||| | ||| || || || | || Sbjct 4297 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 4238 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||| | | | | |||||| | ||| || Sbjct 4237 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATTGTGTCAGAAGATTCAACT 4178 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || ||||| ||||||||||| || ||||| ||||| Sbjct 4177 TCAAGAGTAATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 4131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || || || | |||| ||||||||| ||||| ||||| | Sbjct 5269 CCACCACGAAGACGTAAGACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAA 5210 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || |||||||| || ||||||| | ||| || || || | || Sbjct 5209 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 5150 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||||| | | | || || | | ||| || Sbjct 5149 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAGGATTCAACT 5090 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || ||||| ||||||||||| || ||||| ||||| Sbjct 5089 TCAAGAGTAATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 5043 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||| ||||| | | | | | |||| || |||||||| || |||| Sbjct 4778 TTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAA 4719 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | ||| || || || | || | |||||||| || ||||| ||||| | Sbjct 4718 AATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 4659 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | | ||| || || | |||||| || ||||| ||||||||||| || Sbjct 4658 TTCAATAGTATCAGAGGATTCAACTTCAAGAGTAATGGTCTTACCAGTTAAAGTTTTAAC 4599 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 4598 AAAGATTTGCAT 4587 >seq1265 Length=1280584 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || ||||| | |||| ||||||||| ||||||||||| | Sbjct 257483 CCACCACGAAGACGTAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTATAATCTG-- 257540 Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | ||| |||| || |||||||| || ||||||| | ||| || ||||| | Sbjct 257541 --AAAGAGTTCTACCATCTTCTAATTGTTTTCCTGCAAAAATAAGACGTTGTTGATCTGG 257598 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||||| || ||||| ||| | | | | || || | ||| Sbjct 257599 TGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGAAGATTC 257658 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| || || ||||| |||||||| || || || || ||||| Sbjct 257659 AACTTCTAAAGTGATGGTCTTACCAGTTAAAGTCTTGACAAAAATTTGCAT 257709 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || ||||| | ||| ||||||||| ||||||||||| | Sbjct 260893 CCACCACGAAGACGTAAAACTAAATGAAGAGTAGATTCTTTTTGAATATTATAATCTG-- 260950 Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | ||| |||| || |||||||| || ||||||| | ||| || ||||| | Sbjct 260951 --AAAGAGTTCTACCATCTTCTAATTGTTTACCTGCAAAAATAAGACGTTGTTGATCTGG 261008 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||||| || || ||| ||| | | | | || || | ||| Sbjct 261009 AGGGATACCTTCTTTATCTTGAATCTTTGCTTTGACATTTTCAATGGTATCAGAAGATTC 261068 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || || ||||||||||| || || || ||||| Sbjct 261069 AACTTCTAAAGTGATTGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 261119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361899141627