Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq979 104 2e-17 seq1043 100 3e-16 seq236 96.9 4e-15 seq691 93.3 4e-14 seq413 91.5 2e-13 seq313 91.5 2e-13 seq1721 86.0 7e-12 seq1088 86.0 7e-12 seq1066 86.0 7e-12 seq324 86.0 7e-12 seq1676 84.2 2e-11 seq2 84.2 2e-11 >seq979 Length=271034 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||||||||| ||||| || || | || |||| || || || | |||| | ||||| Sbjct 224044 GAAAGTACGAGCAATTACTTCTCTTTGTTGTTGTGGAGTAAGTCTAATAAAATGAACAGC 223985 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 |||||||||||||||||| || | | |||||| |||||||||||| | ||||||||| Sbjct 223984 ATAACCAGAAACACGAATTGTTAAGTTAGGATAGTTTTCTGGATGTGCCATTGCATCTTC 223925 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTT 62153 |||||| |||| | | ||||| | ||| Sbjct 223924 TAAAGTAGATTTATTTAATACATTAATGTT 223895 >seq1043 Length=1347342 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||||||||| |||||||| || | || |||| || || || | |||| | ||||| Sbjct 863622 GAAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGC 863563 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 |||||||||||||||||| || | | ||||||||||||||||| | |||||||| Sbjct 863562 ATAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTC 863503 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTT 62153 ||||||| ||| | | ||||| || || Sbjct 863502 TAAAGTTGACTTATTTAATACATTAACATT 863473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 62058 GACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 62117 |||||||||||| |||||||||||||| || | ||||| ||||||||||| | || Sbjct 637351 GACAGCATAACCTGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATGGC 637292 Query 62118 ATCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 ||||||||||||||| | |||||||| || || ||||| || |||| Sbjct 637291 ATCTTCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 637241 >seq236 Length=489515 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 61988 ATTACATTTCCTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAG 62047 ||||||||| | ||| ||||| |||||||| || || |||| || || | Sbjct 435850 ATTACATTTTATCATGGAAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTAACT 435791 Query 62048 AATTAAATCGGACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGAT 62107 | ||| ||||||||||| |||||||||||||| || | ||||| |||||||||| Sbjct 435790 TAACAAAGTTTACAGCATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGAT 435731 Query 62108 GTTGAACTGCATCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCAC 62167 | | |||||||||||||||||| | |||||||| || || ||||| || ||| Sbjct 435730 GAGCCATTGCATCTTCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCAC 435671 Query 62168 C 62168 | Sbjct 435670 C 435670 >seq691 Length=385463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/113 (79%), Gaps = 6/113 (5%) Strand=Plus/Plus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 ||||| |||||||||||||||||||| || | ||||| |||||||| |||| | ||| Sbjct 88585 ACAGCGTAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGGTGTTCCATAGCA 88644 Query 62119 TCTTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 |||||||| ||||| |||| |||||||| || || ||||| || |||| Sbjct 88645 TCTTCTAAGGTTTCACGTTTA---AGAACATTAACATTAAGATGGTGAGCACC 88694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/113 (79%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 ||||| |||||||||||||||||||| || | ||||| |||||||| |||| | ||| Sbjct 98706 ACAGCGTAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGGTGTTCCATAGCA 98647 Query 62119 TCTTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 |||||||| ||||| |||| |||||||| || || ||||| || |||| Sbjct 98646 TCTTCTAAGGTTTCACGTTTA---AGAACATTAACATTAAGATGGTGAGCACC 98597 >seq413 Length=437716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||||||||| |||||||| || | || || |||| || | | ||| || || Sbjct 218048 GAAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTAATTTAACAAAGTTAACGGC 217989 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||||||||| ||||||||||| || | ||||| |||||||| || | |||||||| Sbjct 217988 ATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATCTTC 217929 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 ||||||||| | ||||| || ||||| ||||| || |||| Sbjct 217928 TAAAGTTTCACGGTTGAGAACGTTAACGTTAAGATGGTGAGCACC 217884 >seq313 Length=466657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||||||||| |||||||| || || || ||| || | | ||| ||| || Sbjct 153348 GAAAGTACGAGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACAAAGTTGACGGC 153407 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||||||||||||||||||||| || | ||||| ||||| ||||| | |||||||| Sbjct 153408 ATAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCAGGATGAGCCATAGCATCTTC 153467 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 ||||||||| | |||||||| || || ||||| || |||| Sbjct 153468 TAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 153512 >seq1721 Length=570012 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 62004 GAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACAGC 62063 ||| ||||| |||||||| || ||| || ||| || | | ||| |||||| Sbjct 380170 GAAGGTACGAGCAATAACTTCCTTCTGTTGGGCTGGAGTTAATTTAACAAAGTTGACAGC 380111 Query 62064 ATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 62123 ||||||||||||||||| || | | ||||| |||||||| || | ||||||||| Sbjct 380110 GTAACCAGAAACACGAATGGTTAAGTTTGGATAGTTTTCTGGGTGAGCCATTGCATCTTC 380051 Query 62124 TAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTT 62170 ||| ||||| | |||||||| || || ||||| ||| | |||| Sbjct 380050 TAAGGTTTCACGCTTAAGAACATTAACATTAAGATGATGGGCTCCTT 380004 >seq1088 Length=861023 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 ||||| ||||| |||||||||||||| || | ||||| ||||||||||| | ||| Sbjct 440201 ACAGCGTAACCGGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGATGAGCCATAGCA 440142 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 |||||||||||||| | |||||||| || || ||||| || |||| Sbjct 440141 TCTTCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 440092 >seq1066 Length=864523 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 |||||||| || |||||||||||||| || | ||||| |||||||||||| | ||| Sbjct 794723 ACAGCATATCCTGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGTGCCATAGCA 794782 Query 62119 TCTTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTG 62162 |||||||| ||||| |||| |||||||| || || ||||| || Sbjct 794783 TCTTCTAAGGTTTCACGTTTA---AGAACATTAACATTAAGATGGTG 794826 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 |||||||| || |||||||||||||| || | ||||| |||||||||||| | ||| Sbjct 825894 ACAGCATATCCTGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGTGCCATAGCA 825835 Query 62119 TCTTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTG 62162 |||||||| ||||| |||| |||||||| || || ||||| || Sbjct 825834 TCTTCTAAGGTTTCACGTTTA---AGAACATTAACATTAAGATGGTG 825791 >seq324 Length=463316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 |||||||||||||||||||||||||| || | ||||| |||||||| || | ||| Sbjct 190252 ACAGCATAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGGTGAGCCATAGCA 190193 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACC 62168 |||||||| ||||| | ||||| || || || ||||| ||| |||| Sbjct 190192 TCTTCTAAGGTTTCACGCTTAAGAACGTTAACATTAAGATGGTGGGCACC 190143 >seq1676 Length=585574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 || |||||||||||||||||||| || || | ||||| ||||||||||| | ||| Sbjct 517455 ACGGCATAACCAGAAACACGAATCGTAAGGTTTGGATAGTTTTCTGGATGAGCCATGGCA 517514 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTG 62162 |||||||||||||| | |||||||| ||||| || || || Sbjct 517515 TCTTCTAAAGTTTCACGCTTAAGAACATTGACGTTAAGGTGGTG 517558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 62059 ACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCA 62118 || |||||||||||||||||||| || || | ||||| ||||||||||| | ||| Sbjct 528002 ACGGCATAACCAGAAACACGAATCGTAAGGTTTGGATAGTTTTCTGGATGAGCCATGGCA 527943 Query 62119 TCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTG 62162 |||||||||||||| | |||||||| ||||| || || || Sbjct 527942 TCTTCTAAAGTTTCACGCTTAAGAACATTGACGTTAAGGTGGTG 527899 >seq2 Length=1177924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 62058 GACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGC 62117 ||||||||| || |||||||||||||| || | ||||| ||||||||||| | || Sbjct 1170391 GACAGCATATCCTGAAACACGAATAGTAAGGTTTGGATAGTTTTCTGGATGAGCCATAGC 1170450 Query 62118 ATCTTCTAAAGTTTC---TTTAGTCAGAACATTCACGTTCAGATGTTG 62162 ||||||||| ||||| |||| |||||||| || || ||||| || Sbjct 1170451 ATCTTCTAAGGTTTCACGTTTA---AGAACATTAACATTAAGATGGTG 1170495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529587958220000