Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1776 84.2 3e-11 >seq1776 Length=554945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 176888 GAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCG 176946 || |||||||||||||| | ||| || ||||| | ||| || ||||| || | ||| || Sbjct 150044 GAAGCATCACGAACATT-TAACATTTTACCACGTAAAGGAAAAACACCATAATTATCACG 150102 Query 176947 ACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGAT 177006 |||||| || | | ||| || || | | ||| |||||||| || || || | || Sbjct 150103 ACCAACTACTGTTAAACCACTAATAGCTAATGCTTTAGCAGAATCTCCTTCCGTAAGAAT 150162 Query 177007 GAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | | ||| | ||| || ||||| || || || |||||||| ||||| ||||| Sbjct 150163 TAATACACAATCTTTAGAGTGCTTTGTACCAGCATTATTAGCATCATCTAATTTTGGAAT 150222 Query 177067 ACCAGTAATTTTGGA-CTTT 177085 ||||| |||| | || |||| Sbjct 150223 ACCAGAAATTCTAGATCTTT 150242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728285869680