Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq1043 113 7e-20 seq979 104 4e-17 seq413 87.8 3e-12 >seq1043 Length=1347342 Score = 113 bits (124), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACGGCA 28047 |||||||||| || ||| || | |||||||| ||| || || | |||| ||| ||| Sbjct 863621 AAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGCA 863562 Query 28048 TAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTCT 28107 |||||||| || ||||| || || | ||| |||||||||||| || ||||||||| Sbjct 863561 TAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTCT 863502 Query 28108 AAAGTTTCTTTATTCAAGACATTTACATTTAAATG 28142 |||||| ||||| || ||||| |||||||| || Sbjct 863501 AAAGTTGACTTATTTAATACATTAACATTTAAGTG 863467 >seq979 Length=271034 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACGGCA 28047 |||||||||| || || || | |||||||| ||| || || | |||| ||| ||| Sbjct 224043 AAAGTACGAGCAATTACTTCTCTTTGTTGTTGTGGAGTAAGTCTAATAAAATGAACAGCA 223984 Query 28048 TAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTCT 28107 |||||||| || |||||||| || | || || ||||||||| | |||||||||||| Sbjct 223983 TAACCAGAAACACGAATTGTTAAGTTAGGATAGTTTTCTGGATGTGCCATTGCATCTTCT 223924 Query 28108 AAAGTTTCTTTATTCAAGACATTTACATTTAAATG 28142 ||||| |||||| || ||||| | ||||| || Sbjct 223923 AAAGTAGATTTATTTAATACATTAATGTTTAAGTG 223889 >seq413 Length=437716 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 27988 AAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACGGCA 28047 |||||||||| || ||| || | |||||| ||||| |||| | ||| |||||||| Sbjct 218047 AAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTAATTTAACAAAGTTAACGGCA 217988 Query 28048 TAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCTTCT 28107 |||||||| || ||||| || | | ||| || |||||||| || ||||||||| Sbjct 217987 TAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATCTTCT 217928 Query 28108 AAAGTTTC 28115 |||||||| Sbjct 217927 AAAGTTTC 217920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752587687648360