Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1057 104 3e-17 seq413 102 1e-16 seq491 98.7 1e-15 seq1776 95.1 2e-14 seq25 93.3 6e-14 seq1000 84.2 3e-11 >seq1057 Length=193414 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 98696 ATTAAAGTTGCCCAGTTGAGTGGTTACATTGCGGAACAAACTGATTATAAACACGGTGAA 98755 ||||| ||||| || | | |||||| ||||| ||||| |||| |||| | || || ||| Sbjct 95665 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCTTATCATCATGGCGAA 95724 Query 98756 CAAAACCTTTGTGAAACAATAATAAAATTTGCACAAGATTTTGTGGGTACAAATAATATA 98815 |||| |||| || || |||| || |||||||||||||| |||| |||||||| Sbjct 95725 CAAAGTCTTTCAACTACTATTGTAAATTTGGCACAAGATTTTGTTGGTAGTAATAATATT 95784 Query 98816 ACACTACTTGAGCCAGATGGTCAGTTTGGTAC 98847 || || | | ||| ||||||| |||||||| Sbjct 95785 TCATTATTAGTTCCAAATGGTCAATTTGGTAC 95816 >seq413 Length=437716 Score = 102 bits (112), Expect = 1e-16 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 104921 GGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCAC 104980 |||||| | ||||| | | ||||||||| ||| | ||| | ||| || ||| || Sbjct 65871 GGTGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGG-TTTAAC 65929 Query 104981 TTTC-GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGC 105039 | || |||||||||||||||||||||| ||||| | |||||| | ||| |||||| Sbjct 65930 TGAAAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGC 65989 Query 105040 TCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGT 105099 | ||||||| || ||| | || || ||||| || ||||| | ||| || | || | || Sbjct 65990 TAAATATATAGATTGTCACACAGATTATACAGGACAAGGAAAAGATCAGCTTCGTGATGT 66049 Query 105100 TATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTAT 105144 ||| || | || | ||||| || | ||||||| ||||| Sbjct 66050 TATTGATAAAATTATTAATAAGCCAACTGATAGAAGAATTATTAT 66094 >seq491 Length=416277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 252/377 (67%), Gaps = 15/377 (4%) Strand=Plus/Plus Query 39055 CAGCTGGAACAGGTAAATCAGCCTTAATTAAATATTTT-------TGTTCAAA---AAAT 39104 ||||||||||||| ||||| | ||| || ||||| || | || || |||| Sbjct 217912 CAGCTGGAACAGGAAAATCGGTTTTACTTCAATATATTATAAATTTATTAAAGTCTAAAT 217971 Query 39105 GCTTCaaaaaaaGTTATTGGGTTAACATCTACCACTGGAATTTCTGCTTTAAATATTGGT 39164 |||||| | | || ||| | ||| | | ||||| ||| | || | ||||||||| Sbjct 217972 A-TTCAAATTATGAAATCGGGGTCACAGCATCAACTGGGATTGCAGCAATTAATATTGGT 218030 Query 39165 GGTTGCACTCTTCATTCATTATTGGGAATAGGACTTGGTAAAGAAACTGTGGATGATTTG 39224 ||||| || ||||||||||| | ||| | ||||||| | |||| | || |||| Sbjct 218031 GGTTGTACACTTCATTCATTTCTTGGATTGGGACTTGCAACGGAAAACATCAAT-ATTT- 218088 Query 39225 TACGataaaatattaaaaaa-taaagataaaaGAGAAT-TATGGTTGCGTTTAGATGTGT 39282 || || |||| ||||||||| | || | | | |||| ||| | | | | |||| Sbjct 218089 TAAGAGAAAAGATTAAAAAACTTAAAAGAGTAAGGAATCGTTGGATAAATACAAAAGTGT 218148 Query 39283 TGGTAATAGATGAAATAAGTATGCTTCATCCAGACCTTTTTGATAAATTGGAAAAGTTAG 39342 | | || |||||||| |||| || || || ||||||||||| | ||| | | Sbjct 218149 TAATTATTGATGAAATTTCTATGATTGATTCAATATTTTTTGATAAAGTAGAAGCTATTG 218208 Query 39343 CAAGAATGATTAGAGAGTGTAAGAAACGATTTGGAGGAATACAATTGGTGGTAACAGGAG 39402 ||| | | ||| | |||| ||| |||||| ||||| ||| | | | |||||| | Sbjct 218209 CAAAATTTGCCAGATATAGTAAAGAACCATTTGGTGGAATCCAAGTTATAGCAACAGGTG 218268 Query 39403 ACCTTTTTCAATTACCA 39419 | ||| ||| |||||| Sbjct 218269 ATTTTTATCAGTTACCA 218285 >seq1776 Length=554945 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 98696 ATTAAAGTTGCCCAGTTGAGTGGTTACATTGCGGAACAAACTGATTATAAACACGGTGAA 98755 ||||| || || || | | ||||||||| || ||||| |||| ||| | || |||||| Sbjct 148918 ATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGCTTACCATCATGGTGAA 148859 Query 98756 CAAAACCTTTGTGAAACAATAATAAAATTTGCACAAGATTTTGTGGGTACAAATAATATA 98815 |||| |||| | || || | || || || ||||||||||| |||| |||||||| Sbjct 148858 CAAAGTCTTTCTACTACTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATATT 148799 Query 98816 ACACTACTTGAGCCAGATGGTCAGTTTGGTAC 98847 || || | | ||| ||||||| |||||||| Sbjct 148798 CCATTATTAGTTCCAAATGGTCAATTTGGTAC 148767 >seq25 Length=537036 Score = 93.3 bits (102), Expect = 6e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 126913 GTGGTTTTACTGGAAGAAGGATAA-AGAGTAAAATTTTTATAGGTCCAACATACTATCAT 126971 ||||| ||||||| ||| || | || | | || || | |||||| || ||||| Sbjct 405682 GTGGTATTACTGGT-GAACCATTAGAGGCTTATATATTCTTTGGTCCAGTATTTTATCAA 405624 Query 126972 CGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAACAACA 127031 ||||| ||||| |||||| |||||| |||||||||||| || |||| || | | Sbjct 405623 CGTCTAAAACACATGGTTTTAGATAAGATGCATGCTAGATCTCGTGGTAAACGTGCTGTA 405564 Query 127032 TTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATG 127091 ||| | ||||||| |||||||| || |||||| | | |||| |||||| Sbjct 405563 TTAACAAGACAACCAACAGAAGGTCGTTCAAGAGATGGTGGTCTTCGTGTTGGTGAAATG 405504 Query 127092 GAAAAAGATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAATGTTTTTA 127151 ||| |||||| | | | |||||| || | | || |||| |||||| | | || Sbjct 405503 GAACGTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGATTAATGTTT 405444 Query 127152 TGTTCAGATCCTTTTCAAATTGATGTGTGTACAAATTGTGGAATGATT 127199 || ||| | ||| |||||||||| || | ||||||| ||||| Sbjct 405443 AGTAGTGATGCGTTTGAAATTGATGTATGCCAAGATTGTGGTTTGATT 405396 >seq1000 Length=248534 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 182874 GAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTAT----G 182929 ||||||| |||| ||||| | ||||||||||| || ||||| ||||| ||||| | Sbjct 81158 GAAATGGTGATTATGTTCTTATGAATCGTCAACCTACTTTACACAAACCATCTATTATGG 81217 Query 182930 CAAGCATTTATAGTAGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGGCT 182989 || || | | ||| || || | | | ||||||||| | ||| ||| || | | Sbjct 81218 CACACACTGCTCGTA-TTCTTCCTAAGGAAAAAACTTTACGTATGCATTATGCTAATTGT 81276 Query 182990 AAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAAT 183028 || | || ||||| ||||||||||| |||||||||||| Sbjct 81277 AATACCTATAATGCTGATTTTGATGGTGATGAAATGAAT 81315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658388229557240