Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq1043 82.4 5e-11 >seq1043 Length=1347342 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 27070 AATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACAGCG 27129 || |||||| |||||| || | ||||||| | || ||| | |||| ||||||| Sbjct 863621 AAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGCA 863562 Query 27130 TAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC--CA 27187 || ||||| ||||| ||||| || | ||||||||||| ||||| | ||||| | Sbjct 863561 TAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTCT 863502 Query 27188 AAAGCTGGTCAC-GGCTTAATACATTAACATTTAGGTGCTGACCACC 27233 |||| || || |||||||||||||||||| ||| |||||| Sbjct 863501 AAAGTTG---ACTTATTTAATACATTAACATTTAAGTGGAAACCACC 863458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348197080626026