Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq324 105 2e-17 seq114 93.3 1e-13 >seq324 Length=463316 Score = 105 bits (116), Expect = 2e-17 Identities = 346/525 (66%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 150293 ACTGATCTTGCAGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GA 150351 |||| | | |||| | |||| ||| |||||||| | |||||||| || |||| | || Sbjct 94066 ACTGCTTTAGCAGAACAAGGAAAATTTGATCCAGTCATTGGTCGTGATGATGAAATCAGA 94007 Query 150352 TGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGG-TGCGTTAGTTGGTGAAC 150410 || | |||| || | || ||| || || || ||| ||| | | ||||||||| Sbjct 94006 AGAG-TCATTCGTGTTTTAACTTGTAGAAAGAAGAACAATCCATGCTTGA-TTGGTGAAC 93949 Query 150411 CAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATG 150470 | |||||||||||||| || |||| |||||||| ||| | |||| | | |||| Sbjct 93948 CTGGTGTTGGTAAAACTGCTATTATTGAAGGATTAGCTCAAAGAATCGTTGCTAATGATA 93889 Query 150471 TTCCAGATTCTATGAAAGATGTTGAAATTCT-TTCTTTGAATATGGGTGCATTTACTGCT 150529 | |||| | || || ||| | ||| | |||||| |||||||| | || |||| Sbjct 93888 TCCCAG--CCAATTTAAAGTGT--AGATTATATTCTTTAGATATGGGTTCCTTAGTTGCT 93833 Query 150530 GGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAA 150589 ||||| ||||||||||| || || | | || | | | || | ||| | | Sbjct 93832 GGTACGGCTTATCGTGGTGATTTTGAGAAGAGATTAAAGGCTGTATTAAATGAAGTGACC 93773 Query 150590 GAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGT 150646 ||| | || ||||| | ||||| |||||||| ||| || | || |||||| Sbjct 93772 TCTTCCGAAGAAAATATTATTTTATTCATTGATGAAATTCATTTAGTTCTTGGAGCTGGT 93713 Query 150647 GCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGT 150706 || ||| ||||||| ||||| ||| | || || || || || | ||| Sbjct 93712 GCTACT---AGCGGTTCAATGGATGCTGCAAATTTATTGAAGCCAATGTTAGCTAGAGGT 93656 Query 150707 GAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGA 150765 ||| || | ||| || || || || || | | |||||||||| || | ||||||| || Sbjct 93655 GAACTTAGATGT-ATTGGAGCCACCACTTTAGCTGAATATCGTGAATATGTTGAAAAGGA 93597 Query 150766 TGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACC 150810 ||| || | | ||||||||| | ||| || | | |||||| Sbjct 93596 TGCTGCTTTTGAACGTCGTTTCCAACAAGTTTATGTAGGTGAACC 93552 >seq114 Length=514878 Score = 93.3 bits (102), Expect = 1e-13 Identities = 333/511 (65%), Gaps = 21/511 (4%) Strand=Plus/Plus Query 150309 AAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGATT 150367 |||| ||| |||||||| | |||||||| || |||| || || || || ||| || Sbjct 128676 AAGGAAAATTTGATCCAGTTATTGGTCGTGATGATGAAATTAGAAGAGTTA-TTCGTGTT 128734 Query 150368 CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACA 150427 | || | | || || || ||| ||| ||||||||||||||||||||||||| Sbjct 128735 TTAACTTGCAGAAAGAAGAATAATCCATGTTTAATTGGTGAACCAGGTGTTGGTAAAACT 128794 Query 150428 CAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAA 150487 || |||| || ||||| ||| | || | | | |||| | ||| | | |||| Sbjct 128795 GCTATTATTGAAGGTTTAGCTCAAAGAATTGTTGCTAATGATATACCAACTAATTTGAA- 128853 Query 150488 GATGTTGAAATTCT-TTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGG 150546 |||| | ||| | ||||| |||||||| | || |||||||||| | |||||| Sbjct 128854 -ATGT--AGATTATACTCTTTAGATATGGGTTCTTTAGTTGCTGGTACTGCATTTCGTGG 128910 Query 150547 TGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAA------GAACGCGATGA 150600 ||| |||||| | | || | | || | ||| | | | ||| || | Sbjct 128911 TGATTTCGAAAAGAGATTAAAGGCCGTATTAAATGAAGTCACATCTTCTGAA---GAAAA 128967 Query 150601 TGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGG 150660 | | ||||| ||||| ||||| || ||| | | ||||| ||||| ||| | || Sbjct 128968 TATCATTCTATTCATTGATGAGATTCATTTGGTACTTGGTGCCGGTGCTACT---AGTGG 129024 Query 150661 TTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCA 150719 |||| ||||| || | |||||||| | | | |||||| || | ||| | Sbjct 129025 TTCTATGGATGCCGCAAACTTATTAAAACCAATGTTGGCCAGAGGTGAACTTAGATGT-A 129083 Query 150720 TCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGC 150779 | ||||| || || | | ||| |||||| || | ||||||| ||||| || | | | Sbjct 129084 TTGGTGCTACTACTTTGGCTGAGTATCGTGAATATGTTGAAAAGGATGCTGCGTTTGAAC 129143 Query 150780 GTCGTTTCATGAAGGTTGATATTGTTGAACC 150810 |||||||| | ||| || ||| |||||| Sbjct 129144 GTCGTTTCCAACAAGTTTATGTTGGTGAACC 129174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147563654329862