Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq813 93.3 9e-14 seq234 93.3 9e-14 seq979 87.8 4e-12 >seq813 Length=368622 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 321601 CATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCACAGAAATTTCCTGAA 321660 ||||||||||| ||||||||| ||| ||||||||| || || ||||||| Sbjct 26897 CATTTAAATGTGAATGTATTAGTTCGTGAAACATTAGAAGATGCCATGATTCATCCTGAA 26838 Query 321661 AAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCTCTTACG 321720 || ||||| | | |||||||||||||| ||||||||||||| |||| |||| ||| Sbjct 26837 AATTATCCAAATTTAACTATTCGTGTTTCAGGATATGCAGTTCATTTT-ATTCGTTTATC 26779 Query 321721 A--AAGAACAACAAAATGATGTAATTTCACGAACTTT 321755 | ||| ||||||| || || ||| || ||||||| Sbjct 26778 ACCAAG-TCAACAAAGAGAAGTCATTGCAAGAACTTT 26743 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 321601 CATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCACAGAAATTTCCTGAA 321660 ||||||||||| ||||||||| ||| ||||||||| || || ||||||| Sbjct 33479 CATTTAAATGTGAATGTATTAGTTCGTGAAACATTAGAAGATGCCATGATTCATCCTGAA 33538 Query 321661 AAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCTCTTACG 321720 || ||||| | | |||||||||||||| ||||||||||||| |||| |||| ||| Sbjct 33539 AATTATCCAAATTTAACTATTCGTGTTTCAGGATATGCAGTTCATTTT-ATTCGTTTATC 33597 Query 321721 A--AAGAACAACAAAATGATGTAATTTCACGAACTTT 321755 | ||| ||||||| || || ||| || ||||||| Sbjct 33598 ACCAAG-TCAACAAAGAGAAGTCATTGCAAGAACTTT 33633 >seq234 Length=13011 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 321601 CATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCACAGAAATTTCCTGAA 321660 ||||||||||| ||||||||| ||| ||||||||| || || ||||||| Sbjct 234 CATTTAAATGTGAATGTATTAGTTCGTGAAACATTAGAAGATGCCATGATTCATCCTGAA 293 Query 321661 AAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCTCTTACG 321720 || ||||| | | |||||||||||||| ||||||||||||| |||| |||| ||| Sbjct 294 AATTATCCAAATTTAACTATTCGTGTTTCAGGATATGCAGTTCATTTT-ATTCGTTTATC 352 Query 321721 A--AAGAACAACAAAATGATGTAATTTCACGAACTTT 321755 | ||| ||||||| || || ||| || ||||||| Sbjct 353 ACCAAG-TCAACAAAGAGAAGTCATTGCAAGAACTTT 388 >seq979 Length=271034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 321601 CATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCACAGAAATTTCCTGAA 321660 || ||||| | ||||||||| ||| |||||||| ||| | | ||| ||| Sbjct 223889 CACTTAAACATTAATGTATTAAATAAATCTACTTTAGAAGATGCAATGGCACATCCAGAA 223948 Query 321661 AAATATCCTCAACTTA-CTATTCGTGTTTCTGGATATGCAGTTCGTTTTAATTCTCTTAC 321719 || |||||| |||||| | |||||||||||||| ||||| |||| ||||| | ||||| Sbjct 223949 AACTATCCT-AACTTAACAATTCGTGTTTCTGGTTATGCTGTTCATTTTATTAGACTTAC 224007 Query 321720 GAAAGAACAACAAAATGATGTAATTTCACGAACTTTC 321756 | ||||||||| || |||||| | || |||||| Sbjct 224008 TCCACAACAACAAAGAGAAGTAATTGCTCGTACTTTC 224044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106431812968328