Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1343 147 3e-30 >seq1343 Length=682584 Score = 147 bits (162), Expect = 3e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 ||| | ||||||| |||||||||||| | |||||| |||| | | |||| || | Sbjct 152138 ACCTCTTCTTGGACTTTCATGATTAAATAATATACCATTACATGAAAACATATTATAGGC 152197 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 ||||||||| || ||| ||||| || |||| | ||| || ||||||||||||||||| Sbjct 152198 TTCACGATAATTAACTACAATCCAATAGGCATATAATTTAGCTACACCATAAGGAGAACG 152257 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACT 48149 ||||||||| ||||| | || | |||||| | ||||| || ||||||||||||||||| Sbjct 152258 TGGATAGAATGGTGTTTTTTCATTTTGTGGAATTTCTTGAACTTTACCATAAAGTTCACT 152317 Query 48150 GGTGGATGC 48158 || || || Sbjct 152318 TGTAGAAGC 152326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 48378 TTGATCATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACC 48437 || || ||| || || |||||||| ||||| | | |||| | || || | || || Sbjct 153886 TTTATTATATATATGTTCAATTCTTGCAGTATTGAATGAAGAGGAACGTCGTATTATGCC 153945 Query 48438 ATGAACCTCATACCCCTTT-TCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTG 48496 |||||| | ||| || || | | || || ||||| ||| || |||||||||||||||| Sbjct 153946 ATGAACTTTATATCCTTTACTTATTAATAA-TTCTGTTAAATACGAACCATCTTGTCCTG 154004 Query 48497 TAATACCAGTGATTAAAGCAACTTT 48521 |||||||| | ||||| |||||||| Sbjct 154005 TAATACCACTAATTAATGCAACTTT 154029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665479268321080