Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq944 152 2e-31 seq977 131 5e-25 seq25 96.9 1e-14 seq1000 93.3 1e-13 seq1488 84.2 6e-11 seq313 84.2 6e-11 >seq944 Length=958767 Score = 152 bits (168), Expect = 2e-31 Identities = 220/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || | || |||||| || ||| |||| || |||| ||| ||| Sbjct 611206 ACAAACATGAACACGATAGGCATCACTAGCATCAAATAGACGTTCCTTCAAGAATTGAGC 611147 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| || |||||||||||| ||||||||||||||||||||||||||||| || Sbjct 611146 TGCACCATGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAGACCACCATCACG 611087 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || ||||| || | || |||||||| ||| | | ||||| | || ||||| Sbjct 611086 AGATCTACCTTCAACGGGTTGACGAGTAAGAATTTGTACTGGACCACGAGCACGACTATG 611027 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA---- 251659 |||||||| |||||||||||| | ||| || || ||| ||||| | ||||| Sbjct 611026 AATCTTATCATCTACCATATGCTTTAAACGTTGATAATATGTTGGACCAAGGAAGATTTG 610967 Query 251660 TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 |||| ||| || || | ||||| || | ||| |||||||||| |||| ||||| Sbjct 610966 TGCTTGAA-GCTTT---TTACCAGTATGACCATTAAACATAACTTCAAATCCACGAGATT 610911 Query 251720 CATAACCA 251727 ||||||| Sbjct 610910 GATAACCA 610903 Score = 134 bits (148), Expect = 4e-26 Identities = 347/515 (67%), Gaps = 18/515 (3%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| ||| |||||||||||| |||||||||||| | ||| |||||||||||| Sbjct 611145 GCACCATGACTAATCATACAATCCTTTTCCATTTCACCGAAACGAAGACCACCATCACGA 611086 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || ||||| | || | ||||||||| | || | |||||| |||||||| || | Sbjct 611085 GATCTACCTTCAACGGGTTGACGAGTAAGAATTTGTACTGGACCACGAGCACGACTATGA 611026 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCT 233452 || ||||| | ||||||||||| | | |||||| ||||||| || | || | Sbjct 611025 ATCTTATCATCTACCATATGCTTTAAACGTTGATAATATGTTGGACCAAGGAAGATTTGT 610966 Query 233453 GCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTC-ATTACCCGATGAATTGTA 233511 || || | | || |||| | ||| | | | |||||| | | | ||| || | || Sbjct 610965 GCTTGAAGCTTTTTACCAGTATGACCATTAAACATAACTTCAAATCCACGA-GATTGATA 610907 Query 233512 ACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCTTTATTAGCAAACGC 233571 |||| | ||| |||| || | |||| || | || | || || | || | Sbjct 610906 ACCATTTTCTCTTAAAAGTTTA-GAAATTGCTTCTACTGT-AAC----ATCCGTGAATGG 610853 Query 233572 AGTACAATCACCAAAACCACCA-TACGTCGCACACGCTTTACCCATTAAAGTTTCTATCA 233630 ||| |||||| | ||||| || || | | | ||||| | |||| ||| | || Sbjct 610852 TGTAGCATCACCTTCATCACCAGTAAGT-GTTGAAACCTTACCAAGTAAACATTCAACCA 610794 Query 233631 ACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATTAAATCTGGACGTA 233690 | ||||| || ||||| | ||| | ||| || ||||| ||||| | ||||||| ||| Sbjct 610793 AGTGACCAATTGTCATACGTGATGGAATAGCATGAGGATTAATAATAATATCTGGA-GTA 610735 Query 233691 CT-CCCTCCGATGTAAAAGGCATATCTTTTTCAG--GGAT-TATCAGTCCAACTGTTCCC 233746 | || | |||||| |||||||| ||||| ||| ||| || || || ||| Sbjct 610734 ATACCATTAACTGTAAACGGCATATC---TTCAGTACGATAGGTCATACCTACAGTACCC 610678 Query 233747 TTTTGGCCGCATCTACTACAGAATTTATCACCCAT 233781 ||||| || ||||||| ||||||||||||||| Sbjct 610677 TTTTGACCATGTCTACTAGCGAATTTATCACCCAT 610643 >seq977 Length=918200 Score = 131 bits (144), Expect = 5e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 || || | |||||| ||||||||||||||| || ||||||||||| |||||||||| | Sbjct 729984 TTAATAAGACGACGTTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGTATCAATTAAA 730043 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||||||||||| |||||||| | |||| || || || | || | | Sbjct 730044 CCTTCACGACCACCCATAGCGTGGAAGAAGAATTCTTGTGGAGTTAAACCACGAAGATAT 730103 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || | || ||||||||||| | || || | || ||||||||||| || || Sbjct 730104 GAATTTTCTACGAAACCACGAGATTCAGGACTTTGATCATCTTTGGTAAAGTGAGGAAGT 730163 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || || | | | | || |||| ||||| || || ||||| || || || || | || Sbjct 730164 GTTCTATATTTAAAACCAAATGGAATACGTTTACCTTCAACATTTTGTTGACCTACACAG 730223 Query 302824 GAAATCATCTGCGAAATATT 302843 | |||| || |||||||| Sbjct 730224 GCTGTCATTTGAGAAATATT 730243 Score = 114 bits (126), Expect = 4e-20 Identities = 110/139 (79%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||| |||||| ||| || |||||| | || || || ||| || ||||||||| | Sbjct 729189 AATTCCTTCAA-ACGTGGTACACCAAGTGTAACATT---CTTTGAACTTACACCAGCATA 729244 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||| | || | |||||||| ||| |||||||||||||| || ||||| | Sbjct 729245 GTGGAAAGTATTTAATGTCATTTGAGTAGCTGGTTCACCAATACTTTGAGCAGCAATAGT 729304 Query 301935 ACCAACCATTTCTCCTGGT 301953 |||||||||||| |||||| Sbjct 729305 ACCAACCATTTCACCTGGT 729323 >seq25 Length=537036 Score = 96.9 bits (106), Expect = 1e-14 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| ||| |||| | ||||||||||||||||||||||| ||| ||||||||||| Sbjct 405473 TAGCACCATGACCAATTAAACAATCACGTTCCATTTCACCAACACGAAGACCACCATCTC 405532 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 |||| | ||| | || ||| | ||||| |||| | | ||| ||| | | || Sbjct 405533 TTGAACGACCTTCTGTTGGTTGTCTTGTTAATACAGCACGTTTACCACGAGATCTAGCAT 405592 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACAC-GGACCAATAAATAGT 233449 || |||||| |||||| || || || | |||| || || ||||||| |||| Sbjct 405593 GCATCTTATCTAAAACCATGTGTTTTAGACGTTGATAA-AATACTGGACCAAAGAATATA 405651 Query 233450 TCTGCGTGTAATTGTTCCCCAG 233471 | || | |||| |||| |||| Sbjct 405652 TAAGCCTCTAATGGTTCACCAG 405673 >seq1000 Length=248534 Score = 93.3 bits (102), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||| |||| |||| |||| ||||| ||| | ||| |||||||||||||||||| || Sbjct 83145 ACGTGGAATACCAAGGGTAACGTT---CTTAGCACCAAAACCAGCAAAGTGGAAAGTGTT 83089 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 | || | ||||||| |||| ||||||||||||| || || | | |||||| ||| Sbjct 83088 TAAGGTCATTTGAGTACTTGGTTCACCAATACTTTCAGCAGCTAATAAACCAACAGATTC 83029 Query 301947 TCCTGGT 301953 ||||||| Sbjct 83028 TCCTGGT 83022 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 455129 ATTCCATTAATTTATGCTTGGGCCATAACCATTCATAAATCACAAGGATTAAGTTTAGAT 455188 ||||||||||||| |||||||| || | |||||||||||||||||| || |||||| Sbjct 119949 ATTCCATTAATTTTAGCTTGGGCTCTATCAATTCATAAATCACAAGGACAAACCTTAGAT 120008 Query 455189 GCTGCTATTATGAATATTGGTAAAAATATCTTTGAATACGGTCAAACATATGTTGCTCTG 455248 || || | | | ||| | ||| || ||||||| ||| ||| ||||||||||||| Sbjct 120009 TTTG-TAAGA-GTAGATTTATCGAAA-ATTTTTGAATGCGGACAAGCATATGTTGCTCTT 120065 Query 455249 TCT 455251 ||| Sbjct 120066 TCT 120068 >seq1488 Length=635269 Score = 84.2 bits (92), Expect = 6e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||||| | ||| ||||| |||| | ||| |||| |||| | || | || Sbjct 311177 TACCAACAGCATCTAATTCATCAATAAAAACAATACATGGAGCCTTTTTACGAGCTAATG 311118 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| ||||| | || | ||| |||| ||||||||| | ||| |||||||| | Sbjct 311117 CAACTAATTGACGAACTCTTTTTGCACCAACACCAACATAAAGTTCATCAAATTCACTAC 311058 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||| | |||| |||| | ||| || ||||| || | || ||| || | Sbjct 311057 CACTCATTTGGAAAAATGGTACACCAGATTCACCAGCTACAGCTTTTGCAAGATAAGTTT 310998 Query 289208 TACCTGTTCCAGGTGGTCC 289226 ||||||| |||||||| || Sbjct 310997 TACCTGTACCAGGTGGACC 310979 >seq313 Length=466657 Score = 84.2 bits (92), Expect = 6e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 289028 TACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||||| | ||| ||||| || || | ||| || | |||| || || || | Sbjct 356586 TACCAACAGCATCTAATTCATCAATAAATATAATACATGGTGCCTTTTTTCGAGCCATAG 356527 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| ||| | | || | |||||||| ||||||||| | ||| |||||||| Sbjct 356526 CAACTAACTGACGAACTCTTTTTGCTCCAACACCAACATAAAGTTCATCAAATTCACTTC 356467 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | | ||| | |||| |||| | || || |||||||| | || ||| || | Sbjct 356466 CACTCATTTGGAAAAATGGTACACCAGACTCACCAGCTACTGCTTTTGCAAGATAAGTTT 356407 Query 289208 TACCTGTTCCAGGTGGTCC 289226 ||||||| ||||||||||| Sbjct 356406 TACCTGTACCAGGTGGTCC 356388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783297911003