Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq413 136 5e-27 seq1057 114 2e-20 seq1776 105 8e-18 seq491 104 3e-17 seq25 96.9 4e-15 seq944 86.0 8e-12 >seq413 Length=437716 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 172454 AGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTAC 172513 ||||||| | | ||| | | ||||||||||||||||||| | ||| | || || || Sbjct 65870 AGGTGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGGTTTAAC 65929 Query 172514 TGAAAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGC 172573 ||||||| |||||||||||||||| ||||| ||||| | |||||| | ||| || || Sbjct 65930 TGAAAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGC 65989 Query 172574 TCAATATATCGACTGTGATACAGATTACACAGGACAAGGA 172613 | ||||||| || ||| | |||||||| |||||||||||| Sbjct 65990 TAAATATATAGATTGTCACACAGATTATACAGGACAAGGA 66029 >seq1057 Length=193414 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 ||||||||||||||| | | ||| ||| |||| ||||| || | |||| | ||||| ||| Sbjct 95665 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCTTATCATCATGGCGAA 95724 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 166069 |||| | | | ||||| | || || || |||||||||||||||| |||||||| Sbjct 95725 CAAAGTCTTTCAACTACTATTGTAAATTTGGCACAAGATTTTGTTGGTAGTAATAATATT 95784 Query 166070 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 166112 ||||| | | || |||||||||||||||| | ||| ||| Sbjct 95785 TCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 95827 >seq1776 Length=554945 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 |||||||| || ||| | | ||| || | || ||||| || | ||| | ||||||||| Sbjct 148918 ATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGCTTACCATCATGGTGAA 148859 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 166069 |||| | | | | ||||| |||| || || |||||||||||||||| |||||||| Sbjct 148858 CAAAGTCTTTCTACTACTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATATT 148799 Query 166070 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 166112 ||||| | | || |||||||||||||||| | ||| ||| Sbjct 148798 CCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 148756 >seq491 Length=416277 Score = 104 bits (114), Expect = 3e-17 Identities = 286/430 (67%), Gaps = 19/430 (4%) Strand=Plus/Plus Query 108869 ACATCAACCACTGGAATTTCTGCTTTAAATATTGGAGGTTCAACACTTCATTCTTTTTTG 108928 ||| || | ||||| ||| | || | |||||||| |||| ||||||||||| ||| | Sbjct 217995 ACAGCATCAACTGGGATTGCAGCAATTAATATTGGTGGTTGTACACTTCATTCATTTCTT 218054 Query 108929 GGTATTGGTCTTGGAAAAGAAAATGTTGATGATTTATACGATAAAATTATTAAAAACAGA 108988 || | || |||| || ||||| | || |||| || || |||| |||||| | Sbjct 218055 GGATTGGGACTTGCAACGGAAAACATCAATATTTTAAGAGAAAAGATTA--AAAAACTTA 218112 Query 108989 GAAAAACATGAATTA--TGGTTAAAATTAGATTTATTAATAATAGATGAAATAAGTATGC 109046 || | | | | | ||| |||| | | | ||||| || |||||||| |||| Sbjct 218113 AAAGAGTAAGGAATCGTTGGATAAATACAAAAGTGTTAATTATTGATGAAATTTCTATGA 218172 Query 109047 TTCATCCAGAGCTTTTTAACAAATTAGAAAAAGTAGCAAGACTTGTTCGAGAAAATAANN 109106 || || || ||||| | ||| ||||| | |||| | ||| || | | ||| Sbjct 218173 TTGATTCAATATTTTTTGATAAAGTAGAAGCTATTGCAAAATTTGCCAGATATAGTAAAG 218232 Query 109107 NNNAATTTGGTGGAATACAATTAATAGTTACAGGAGATTTGTTTCAATTACCTCCGGTAA 109166 |||||||||||| ||| | |||| ||||| ||||| | ||| ||||| || |||| Sbjct 218233 AACCATTTGGTGGAATCCAAGTTATAGCAACAGGTGATTTTTATCAGTTACCACCAGTAA 218292 Query 109167 GTCAAGATTCAACTTTAATT---AT-AAATTCACCAAAATT--TAATAAATGCATTGATA 109220 || || | | || ||| || || ||| ||| | ||| || | |||| | |||| Sbjct 218293 GT-AATAATAAATTTTGCTTTGAATCAAAATCATGGAGATTAGTATTTAATGAAATGATT 218351 Query 109221 CAATTGTAGAATTTAGAAATATTATAAGACAAGTTGACCCTATATTTAAAAATATTTTAA 109280 |||| || | || || |||| |||||| || || ||||||||| ||||||| Sbjct 218352 GAATT----AACT--GATAT-TTAT-AGACAAAAGGATTATAAATTTAAAAAAATTTTAA 218403 Query 109281 ATAAAATTCG 109290 || |||| || Sbjct 218404 ATGAAATACG 218413 >seq25 Length=537036 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/133 (78%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 194242 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGGTATGAT 194300 |||||| |||| |||||||| | ||| || |||| ||||||||| ||||||| | || Sbjct 406088 CCTGAATTAGGTGATAAATTCTCTTCAAGACATGG-TCAAAAAGGTGTTTGTGGTTTAAT 406030 Query 194301 TTATTCACAAGAAGATATGCCATTTAC--AACTTCAGGTATGGTACCAGATATTATTATC 194358 | | ||||||||||||||||||| | ||| ||||| ||||||||||||||||| Sbjct 406029 TGTTAACCAAGAAGATATGCCATTTAGTGATCTT--GGTATTGTACCAGATATTATTATG 405972 Query 194359 AATCCAAATTGTA 194371 || ||| || ||| Sbjct 405971 AACCCACATGGTA 405959 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 194610 TTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGT 194669 ||| || ||||| |||||||||||| ||||| |||||||||||| || ||| || Sbjct 405630 TTATCAACGTCTAAAACACATGGTTTTAGATAAGATGCATGCTAGATCTCGTGGTAAACG 405571 Query 194670 AACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGG 194729 || ||| ||||||||| |||||||| || ||| ||| | | |||| Sbjct 405570 TGCTGTATTAACAAGACAACCAACAGAAGGTCGTTCAAGAGATGGTGGTCTTCGTGTTGG 405511 Query 194730 AGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG--- 194786 ||||||||| || ||| | | | |||||||||| | | || |||| ||||| Sbjct 405510 TGAAATGGAACGTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGATT 405451 Query 194787 AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 194844 |||| ||| ||| |||| | ||| || | ||||| ||| ||| |||||| ||||| Sbjct 405450 AATG-TTTAGTA--GTGATGCGTTTGAAATTGATGTATGCCAAGATTGTGGTTTGATT 405396 >seq944 Length=958767 Score = 86.0 bits (94), Expect = 8e-12 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 194522 ATGGTTTTGATTCTACTGGGTCTGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTG 194581 |||||| | | ||| ||| | |||| |||| | || |||||||||||| || Sbjct 610902 ATGGTTATCAATCTCGTGGATTTGAAGTTATGTTTAATGGTCATACTGGTAAAAAGCTTC 610961 Query 194582 AAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATA 194641 || |||| || | || ||||| ||||| || ||| | || || ||||| | |||| Sbjct 610962 AAGCACAAATCTTCCTTGGTCCAACATATTATCAACGTTTAAAGCATATGGTAGATGATA 611021 Query 194642 AAATGCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGT 194700 | || ||| | | || ||| | |||| | | |||| ||| ||||| | ||| Sbjct 611022 AGATTCATAGTCGTGCTCGTGGTCCAGTACAAATTCTTAC-TCGTCAACCCGTTGAAGGT 611080 Query 194701 CGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT-TTTAGTCCA 194759 | |||| | ||| ||| | | || || ||||||||||| || ||||| ||||| || Sbjct 611081 AGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGGATTGTATGATTAGT-CA 611139 Query 194760 TGGTGCTACTCAATTCTTAAATGAA 194784 |||||| |||||||||| || ||| Sbjct 611140 TGGTGCAGCTCAATTCTTGAAGGAA 611164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632475218767720