Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq952 102 5e-17 >seq952 Length=293713 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| || || || || | || |||| || | |||||| ||||||||| Sbjct 167299 TCCTTTTGAATGTTGTAATCGGAAAGAGTACGACCATCTTCTAATTGCTTACCGGCGAAG 167240 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| |||||| | || | || ||||| || | || || |||||| | Sbjct 167239 ATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTTAGCTTTGACATTT 167180 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||||| |||| ||| || ||||| ||||| ||||| || ||| Sbjct 167179 TCAATAGTGTCGGAGGATTCGACCTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACA 167120 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 167119 AAAATTTGCAT 167109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685579695961