Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1265 87.8 1e-12 >seq1265 Length=1280584 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 |||||||||||||||||| ||||||||||| || || || || || | ||| || | Sbjct 265845 TAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACTATCACTTTAGAAGTTGAATC 265786 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | |||||| | | | || ||| |||||| ||||||||||| | || || Sbjct 265785 TTCTGATACTATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGA 265726 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 || || | ||||||| ||| |||||||| | || || | | ||| | | || || Sbjct 265725 CCAACAACGTCTTATTTTTGCAGGTAAACAATTAGAAGATGGTAGAACTCTTTCTGATTA 265666 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||| |||||||| || ||||| Sbjct 265665 CAATATTCAAAAAGAATCTAC 265645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 ||||||||||||||||||||| |||||||| || || ||||| || | ||| || | Sbjct 261351 TAAAATGCAAATTTTTGTCAAGACTTTAACTGGTAAGACCATCACTTTAGAAGTTGAATC 261292 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | |||||| | | | || ||| || ||| ||||||||||| | || || Sbjct 261291 TTCTGATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGA 261232 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||| || | ||||||| ||| || ||||| | || || | | ||| | | || || Sbjct 261231 TCAACAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGTAGAACTCTTTCAGATTA 261172 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 || |||||||| || ||||| Sbjct 261171 TAATATTCAAAAAGAATCTAC 261151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| |||||||| || || ||||||||| | ||| || || Sbjct 264701 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACCATTACCCTTGAAGTTGAATCTTCT 264642 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| ||||||||||| | || ||||| Sbjct 264641 GATACCATTGAAAATGTCAAGGCCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAA 264582 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||||| ||| || ||||| | || || | | ||| | | || || || Sbjct 264581 CAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGTAGAACTCTTTCAGATTATAAT 264522 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT--AATAAAA 107793 |||||||| || ||||| | ||| | || || | | || || ||| || ||||||| Sbjct 264521 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTACGTGGAGGATATTAAATAAAA 264462 Query 107794 -ATAT 107797 |||| Sbjct 264461 TATAT 264457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867957275291