Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq979 102 9e-17 seq413 96.9 4e-15 seq1043 89.7 6e-13 seq1676 86.0 7e-12 seq313 84.2 2e-11 seq236 84.2 2e-11 >seq979 Length=271034 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 61353 GAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACGGC 61412 |||||| || | ||| || || | ||||| | |||||| || | ||||| |||| || Sbjct 224044 GAAAGTACGAGCAATTACTTCTCTTTGTTGTTGTGGAGTAAGTCTAATAAAATGAACAGC 223985 Query 61413 ATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 61472 ||| |||||||||||||| || | | |||||| |||||||||||| | ||||||||| Sbjct 223984 ATAACCAGAAACACGAATTGTTAAGTTAGGATAGTTTTCTGGATGTGCCATTGCATCTTC 223925 Query 61473 TAAAGT 61478 |||||| Sbjct 223924 TAAAGT 223919 >seq413 Length=437716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 61353 GAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACGGC 61412 |||||| || | |||||| || | ||||| |||||||||| | ||| |||||| Sbjct 218048 GAAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTAATTTAACAAAGTTAACGGC 217989 Query 61413 ATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 61472 ||| ||||| ||||||||||| || | ||||| |||||||| || | |||||||| Sbjct 217988 ATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATCTTC 217929 Query 61473 TAAAGTTTC----TTTAGACAGCACGTTCACGTTCAAATGCTGTCCACC 61517 ||||||||| || ||| ||||| ||||| | ||| || |||| Sbjct 217928 TAAAGTTTCACGGTTGAGA----ACGTTAACGTTAAGATGGTGAGCACC 217884 >seq1043 Length=1347342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 61353 GAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACGGC 61412 |||||| || | |||||| || | ||||| | ||| || || | |||| |||| || Sbjct 863622 GAAAGTACGAGCAATAACTTCTCTTTGTTGTTGTGGTGTAAGTCTAATAAAGTGAACAGC 863563 Query 61413 ATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 61472 ||| |||||||||||||| || | | ||||||||||||||||| | |||||||| Sbjct 863562 ATAACCAGAAACACGAATGGTTAAATTTGGATATTTTTCTGGATGAACCATAGCATCTTC 863503 Query 61473 TAAAGTT 61479 ||||||| Sbjct 863502 TAAAGTT 863496 >seq1676 Length=585574 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 61326 TTCAATTGACATTACATTTCCTTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTC 61385 || |||||| |||||||| | | | |||||| || | ||| || || ||||| | Sbjct 517375 TTTAATTGAT-TTACATTTTTTCATG-GAAAGTACGGGCAATGACTTCCTTTTGTTGAGC 517432 Query 61386 TGGAGTTAGAGCATTAAAACGAACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATA 61445 ||| |||| | ||| ||||||||| |||||||||||||| || || | ||||| Sbjct 517433 TGGTGTTAATTTAACAAAGTTAACGGCATAACCAGAAACACGAATCGTAAGGTTTGGATA 517492 Query 61446 TTTTTCTGGATGTTGAACTGCATCTTCTAAAGTTTC 61481 ||||||||||| | ||||||||||||||||| Sbjct 517493 GTTTTCTGGATGAGCCATGGCATCTTCTAAAGTTTC 517528 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 61323 ATCTTCAATTGACATTACATTTCCTTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTG 61382 || || |||||| |||||||| | | | |||||| || | ||| || || ||||| Sbjct 528085 ATTTTTAATTGAT-TTACATTTTTTCATG-GAAAGTACGGGCAATGACTTCCTTTTGTTG 528028 Query 61383 CTCTGGAGTTAGAGCATTAAAACGAACGGCATAGCCAGAAACACGAATAGTCAGCTGAGG 61442 |||| |||| | ||| ||||||||| |||||||||||||| || || | || Sbjct 528027 AGCTGGTGTTAATTTAACAAAGTTAACGGCATAACCAGAAACACGAATCGTAAGGTTTGG 527968 Query 61443 ATATTTTTCTGGATGTTGAACTGCATCTTCTAAAGTTTC 61481 ||| ||||||||||| | ||||||||||||||||| Sbjct 527967 ATAGTTTTCTGGATGAGCCATGGCATCTTCTAAAGTTTC 527929 >seq313 Length=466657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 61353 GAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACGGC 61412 |||||| || | |||||| || ||||| ||||||||| | ||| ||||| Sbjct 153348 GAAAGTACGAGCAATAACTTCCTTTTGTTGAGCTGGAGTTAACTTAACAAAGTTGACGGC 153407 Query 61413 ATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCTTC 61472 ||| ||||||||||||||||| || | ||||| ||||| ||||| | |||||||| Sbjct 153408 ATAACCAGAAACACGAATAGTAAGGTTTGGATAGTTTTCAGGATGAGCCATAGCATCTTC 153467 Query 61473 TAAAGTTTC 61481 ||||||||| Sbjct 153468 TAAAGTTTC 153476 >seq236 Length=489515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 61336 ATTACATTTCCTTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGA 61395 ||||||||| | | | ||| || || | |||||| || ||||| | |||||||| Sbjct 435850 ATTACATTTTATCATG-GAAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTAAC 435792 Query 61396 GCATTAAAACGAACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGA 61455 | ||| || ||||| || |||||||||||||| || | ||||| ||||||||| Sbjct 435791 TTAACAAAGTTTACAGCATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGA 435732 Query 61456 TGTTGAACTGCATCTTCTAAAGTTTC 61481 || | |||||||||||||||||| Sbjct 435731 TGAGCCATTGCATCTTCTAAAGTTTC 435706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554342595348640