Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq413 136 5e-27 seq1776 107 2e-18 seq1057 105 8e-18 seq25 98.7 1e-15 seq491 93.3 5e-14 seq944 89.7 7e-13 seq977 86.0 8e-12 seq1066 84.2 3e-11 >seq413 Length=437716 Score = 136 bits (150), Expect = 5e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 168581 AGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTAC 168640 ||||||| | | ||| | | ||||||||||||||||||| | ||| | ||||| || Sbjct 65870 AGGTGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGGTTTAAC 65929 Query 168641 CGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGC 168700 |||||| |||||||||||||||| ||||| ||||| | |||||| | ||| ||||| Sbjct 65930 TGAAAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGC 65989 Query 168701 TCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCA 168748 | ||||||| || ||| | |||||||| || ||||||||| ||| || Sbjct 65990 TAAATATATAGATTGTCACACAGATTATACAGGACAAGGAAAAGATCA 66037 >seq1776 Length=554945 Score = 107 bits (118), Expect = 2e-18 Identities = 168/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 162924 TTGATGGTCTTAAAGAATCTCAAAGAAAGGTTATTTATGCCA--TAAGaaaaaaaTTTAG 162981 |||||||| ||||| | |||||||||| || |||||| | ||| ||||||| Sbjct 148986 TTGATGGTTTTAAACCAGGTCAAAGAAAGATTCTTTATGGATGTTTCAAAAGAAATTTA- 148928 Query 162982 ATCAAAAGGGGATTTTATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGA 163041 | ||| | | |||||||| || ||| | | ||| || | || ||||| || | Sbjct 148927 ---ACAAGTGAA----ATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGC 148875 Query 163042 CTATAAACACGGTGAACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGT 163101 || | || |||||||||| | | | | ||||| |||| || || ||||||||||| Sbjct 148874 TTACCATCATGGTGAACAAAGTCTTTCTACTACTATTGTTAATTTAGCTCAAGATTTTGT 148815 Query 163102 TGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 163160 ||||| |||||||| ||||| | | || |||||||||||||||| | ||| ||| Sbjct 148814 TGGTAGTAATAATATTCCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 148756 >seq1057 Length=193414 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||||||||||||| | | ||| ||| |||| ||||| || | ||| | || || ||| Sbjct 95665 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCTTATCATCATGGCGAA 95724 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 163117 |||| | | | ||||| | || || || |||||||||||||||| |||||||| Sbjct 95725 CAAAGTCTTTCAACTACTATTGTAAATTTGGCACAAGATTTTGTTGGTAGTAATAATATT 95784 Query 163118 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 163160 ||||| | | || |||||||||||||||| | ||| ||| Sbjct 95785 TCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 95827 >seq25 Length=537036 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 |||||| |||| |||||||| | |||| || |||| | ||||||| ||||||| | || Sbjct 406088 CCTGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 406030 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAA 193564 | | ||||||||||||||||||| | | ||||| ||||||||||||||||| || Sbjct 406029 TGTTAACCAAGAAGATATGCCATTTAGTGATCTTGGTATTGTACCAGATATTATTATGAA 405970 Query 193565 TCCAAATTGTA 193575 ||| || ||| Sbjct 405969 CCCACATGGTA 405959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 193814 TTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAA-G 193872 |||||| ||||| ||||| |||||| ||||| |||||||||||| || ||| || | Sbjct 405630 TTATCAACGTCTAAAACACATGGTTTTAGATAAGATGCATGCTAGATCTCGTGGTAAACG 405571 Query 193873 TGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTG 193932 || || ||| ||||||||| |||||||| || ||| ||| | | ||| Sbjct 405570 TGCTGTATTAACAA-GACAACCAACAGAAGGTCGTTCAAGAGATGGTGGTCTTCGTGTTG 405512 Query 193933 GAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAG-- 193990 | |||||||| || ||| | | | ||||||||||| | | || || | ||||| Sbjct 405511 GTGAAATGGAACGTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGAT 405452 Query 193991 -AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 194048 |||| ||| ||| |||| | ||| || | ||||| ||| ||| |||||| ||||| Sbjct 405451 TAATG-TTTAGTA--GTGATGCGTTTGAAATTGATGTATGCCAAGATTGTGGTTTGATT 405396 >seq491 Length=416277 Score = 93.3 bits (102), Expect = 5e-14 Identities = 284/431 (66%), Gaps = 21/431 (5%) Strand=Plus/Plus Query 110991 ACATCAACCACTGGAATTTCTGCTTTAAATATTGGAGGTTCAACGCTTCATTCTTTTTTG 111050 ||| || | ||||| ||| | || | |||||||| |||| || |||||||| ||| | Sbjct 217995 ACAGCATCAACTGGGATTGCAGCAATTAATATTGGTGGTTGTACACTTCATTCATTTCTT 218054 Query 111051 GGTATTGGTCTTGGAAAAGAAAATGTGGATGATTTATACGAtaaaattattaaaaataga 111110 || | || |||| || ||||| | || |||| || || |||| |||||||| Sbjct 218055 GGATTGGGACTTGCAACGGAAAACATCAAT-ATTT-TAAGAGAAAAG-ATTAAAAAACTT 218111 Query 111111 gaaaaac--atgaattat-ggttaaaattagatttattaataattGATGAAATAAGTATG 111167 ||| | | |||| | || |||| | | | ||||| ||||||||||| |||| Sbjct 218112 AAAAGAGTAAGGAATCGTTGGATAAATACAAAAGTGTTAATTATTGATGAAATTTCTATG 218171 Query 111168 CTTCATCCAGAGCTTTTTAACAAATTAGAAAAAGTAGCGAGACTTGTTCGAGAAAATAAN 111227 || || || ||||| | ||| ||||| | || | | ||| || | | ||| Sbjct 218172 ATTGATTCAATATTTTTTGATAAAGTAGAAGCTATTGCAAAATTTGCCAGATATAGTAAA 218231 Query 111228 NNNNAATTTGGTGGAATACAATTAATAGTTACAGGAGATTTGTTTCAATTACCTCCGGTA 111287 |||||||||||| ||| | |||| ||||| ||||| | ||| ||||| || ||| Sbjct 218232 GAACCATTTGGTGGAATCCAAGTTATAGCAACAGGTGATTTTTATCAGTTACCACCAGTA 218291 Query 111288 AGTCAAGATTCAACTTTAATT---AT-AAATTCGTCAAAATT--TAATAAATGCATCGAT 111341 ||| || | | || ||| || || ||| || | | ||| || | |||| Sbjct 218292 AGT-AATAATAAATTTTGCTTTGAATCAAAATCATGGAGATTAGTATTTAATG------- 218343 Query 111342 ACAATTGTTGAATTTAGAAATATTATAAGACAAGTTGACCCTATATTTAAAAATATTTTA 111401 ||| ||||||| | ||||| |||||| || || ||||||||| |||||| Sbjct 218344 -AAATGATTGAATTAACTGATATTTATAGACAAAAGGATTATAAATTTAAAAAAATTTTA 218402 Query 111402 AATAAAATTCG 111412 ||| |||| || Sbjct 218403 AATGAAATACG 218413 >seq944 Length=958767 Score = 89.7 bits (98), Expect = 7e-13 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 193726 ATGGTTTTGATTATACTGGGTCTGAAACAATGTATTGTGGGTTTACTGGTAAAAGAATTG 193785 |||||| | | | | ||| | |||| |||| | ||| ||||||||||| || Sbjct 610902 ATGGTTATCAATCTCGTGGATTTGAAGTTATGTTTAATGGTCATACTGGTAAAAAGCTTC 610961 Query 193786 AAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATA 193845 || |||| || | || ||||| |||||||| ||| | || |||||||| | |||| Sbjct 610962 AAGCACAAATCTTCCTTGGTCCAACATATTATCAACGTTTAAAGCATATGGTAGATGATA 611021 Query 193846 AAATGCATGCTAGAAGTCATGGACAAGTGACTACTT--TACATCGACAACCAAATTGTGG 193903 | || ||| | | || ||| | ||| || | || ||| ||| ||||| | || Sbjct 611022 AGATTCATAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-TCGTCAACCCGTTGAAGG 611079 Query 193904 TCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATT-TTAGTTC 193962 | | |||| | ||| ||| | | || || |||||||| || || ||||| ||||| | Sbjct 611080 TAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGGATTGTATGATTAGT-C 611138 Query 193963 ATGGTGCTACTCAATTCTTGAATGAA 193988 ||||||| ||||||||||||| ||| Sbjct 611139 ATGGTGCAGCTCAATTCTTGAAGGAA 611164 >seq977 Length=918200 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || | | Sbjct 731094 CATATAATGCTGATTTTGATGGAGATGAAATGAATTTACACGTTCCACAATCTTACGAAA 731035 Query 52048 CTACTGCTGAATTACAAGAA 52067 | | || ||| | |||||| Sbjct 731034 CAAAGGCCGAAGTTCAAGAA 731015 >seq1066 Length=864523 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 192997 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 193056 |||||||||| |||||||||| ||||| ||||| |||||||| | || ||||||| Sbjct 377399 ATAAATTAGATTATTATCCAAACGGTATGAATGCCGTTGTTGCTGTTATTTCTTATACTG 377340 Query 193057 GTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCT 193097 |||| || ||||| ||| |||||||||||| ||||| Sbjct 377339 GTTACGATATGGAAGATGCTATGATTTTAAATAAATCTTCT 377299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635163157649320