Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1057 118 1e-21 seq1776 105 9e-18 seq1000 91.5 2e-13 >seq1057 Length=193414 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 172886 ATTAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAA 172945 |||||||||||||| | | |||||| ||||| ||||| |||| |||| | ||||| ||| Sbjct 95665 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCTTATCATCATGGCGAA 95724 Query 172946 CAAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATA 173005 |||| |||| ||||| |||| || ||||| |||||||| |||| ||||| || Sbjct 95725 CAAAGTCTTTCAACTACTATTGTAAATTTGGCACAAGATTTTGTTGGTAGTAATAATATT 95784 Query 173006 ACATTACTTGAACCAGATGGTCAGTTTGGTACT 173038 ||||| | | ||| ||||||| ||||||||| Sbjct 95785 TCATTATTAGTTCCAAATGGTCAATTTGGTACT 95817 >seq1776 Length=554945 Score = 105 bits (116), Expect = 9e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 172886 ATTAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAA 172945 |||||||| || || | | ||||||||| || ||||| |||| ||| | ||||||||| Sbjct 148918 ATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGCTTACCATCATGGTGAA 148859 Query 172946 CAAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATA 173005 |||| |||| | ||||| | || || || || |||||||| |||| ||||| || Sbjct 148858 CAAAGTCTTTCTACTACTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATATT 148799 Query 173006 ACATTACTTGAACCAGATGGTCAGTTTGGTACT 173038 ||||| | | ||| ||||||| ||||||||| Sbjct 148798 CCATTATTAGTTCCAAATGGTCAATTTGGTACT 148766 >seq1000 Length=248534 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/160 (73%), Gaps = 5/160 (3%) Strand=Plus/Plus Query 52958 AGAAATGGAGATTGGGTTCTATTAAATCGTCAACCAACATTACATAAACCTTCCAT---- 53013 |||||||| |||| ||||| | ||||||||||| || ||||| ||||| || || Sbjct 81157 AGAAATGGTGATTATGTTCTTATGAATCGTCAACCTACTTTACACAAACCATCTATTATG 81216 Query 53014 GCAAGCATTTATCGTAGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCTATGGC 53073 ||| || | ||||| || || | | | ||||||||| | ||| ||| |||| Sbjct 81217 GCACACACTGCTCGTA-TTCTTCCTAAGGAAAAAACTTTACGTATGCATTATGCTAATTG 81275 Query 53074 TAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAAT 53113 ||| | || ||||| ||||||||||| |||||||||||| Sbjct 81276 TAATACCTATAATGCTGATTTTGATGGTGATGAAATGAAT 81315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655265100571000