Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq413 136 5e-27 seq1057 109 7e-19 seq1776 100 4e-16 seq25 96.9 4e-15 seq491 93.3 5e-14 seq977 89.7 6e-13 seq944 84.2 3e-11 >seq413 Length=437716 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171666 AGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTAC 171725 ||||||| | | ||| | | ||||||||||||||||||| | ||| | || || || Sbjct 65870 AGGTGTTCATATATGGGAAGGTAATGGTTCTCGTGAATTTCTTGATAAAATAGGTTTAAC 65929 Query 171726 TGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGC 171785 ||||||| |||||||||||||||| ||||| ||||| | |||||| | ||| || || Sbjct 65930 TGAAAGAGAAGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGAGC 65989 Query 171786 TCAATATATCGACTGTTATACAGATTACACAGGACAAGGA 171825 | ||||||| || ||| | |||||||| |||||||||||| Sbjct 65990 TAAATATATAGATTGTCACACAGATTATACAGGACAAGGA 66029 >seq1057 Length=193414 Score = 109 bits (120), Expect = 7e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||| ||||||||| | | ||| ||| |||| ||||| || | |||| | ||||| ||| Sbjct 95665 ATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCTTATCATCATGGCGAA 95724 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 |||| | | | ||||| | || || || |||||||||||||||| |||||||| Sbjct 95725 CAAAGTCTTTCAACTACTATTGTAAATTTGGCACAAGATTTTGTTGGTAGTAATAATATT 95784 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 165322 ||||| | | || |||||||||||||||| | ||| ||| Sbjct 95785 TCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 95827 >seq1776 Length=554945 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||| || || ||| | | ||| || | || ||||| || | ||| | ||||||||| Sbjct 148918 ATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGCTTACCATCATGGTGAA 148859 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 |||| | | | | ||||| |||| || || |||||||||||||||| |||||||| Sbjct 148858 CAAAGTCTTTCTACTACTATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAATATT 148799 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 165322 ||||| | | || |||||||||||||||| | ||| ||| Sbjct 148798 CCATTATTAGTTCCAAATGGTCAATTTGGTACTCGTTTACAAG 148756 >seq25 Length=537036 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 193367 TTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAA-G 193425 ||| || ||||| |||||||||||| ||||| |||||||||||| || ||| || | Sbjct 405630 TTATCAACGTCTAAAACACATGGTTTTAGATAAGATGCATGCTAGATCTCGTGGTAAACG 405571 Query 193426 TGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTG 193485 || || ||| ||||||||| |||||||| || ||| ||| | | ||| Sbjct 405570 TG-CTGTATTAACAAGACAACCAACAGAAGGTCGTTCAAGAGATGGTGGTCTTCGTGTTG 405512 Query 193486 GAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG-- 193543 | ||||||||| || ||| | | | |||||||||| | | || |||| ||||| Sbjct 405511 GTGAAATGGAACGTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGAT 405452 Query 193544 -AATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 193601 |||| ||| ||| |||| | ||| || | ||||| ||| ||| |||||| ||||| Sbjct 405451 TAATG-TTTAGTA--GTGATGCGTTTGAAATTGATGTATGCCAAGATTGTGGTTTGATT 405396 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/133 (77%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 192999 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193057 |||||| |||| |||||||| | ||| || |||| | ||||||| ||||||| | || Sbjct 406088 CCTGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 406030 Query 193058 TTATTCACAAGAAGATATGCCATTTAC--AACTTCAGGTATGGTACCAGATATTATTATT 193115 | | ||||||||||||||||||| | ||| ||||| ||||||||||||||||| Sbjct 406029 TGTTAACCAAGAAGATATGCCATTTAGTGATCTT--GGTATTGTACCAGATATTATTATG 405972 Query 193116 AATCCAAATTGTA 193128 || ||| || ||| Sbjct 405971 AACCCACATGGTA 405959 >seq491 Length=416277 Score = 93.3 bits (102), Expect = 5e-14 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 109171 ACATCAACCACTGGAATTTCTGCTTTAAATATTGGAGGTTCAACACTTCATTCTTTTTTG 109230 ||| || | ||||| ||| | || | |||||||| |||| ||||||||||| ||| | Sbjct 217995 ACAGCATCAACTGGGATTGCAGCAATTAATATTGGTGGTTGTACACTTCATTCATTTCTT 218054 Query 109231 GGTATTGGTCTTGGAAAAGAAAATGTGGATGATTTATACGataaaattattaaaaataga 109290 || | || |||| || ||||| | || |||| || || |||| |||||||| Sbjct 218055 GGATTGGGACTTGCAACGGAAAACATCAAT-ATTT-TAAGAGAAAAG-ATTAAAAAACTT 218111 Query 109291 gaaaaac--atgaattat-ggttaaaattagatttattaataatagaTGAAATAAGTATG 109347 ||| | | |||| | || |||| | | | ||||| || |||||||| |||| Sbjct 218112 AAAAGAGTAAGGAATCGTTGGATAAATACAAAAGTGTTAATTATTGATGAAATTTCTATG 218171 Query 109348 CTTCATCCAGAGCTTTTTAACAAATTAGAAAAAGTAGCAAGACTTGTTCGAGAAAATAAN 109407 || || || ||||| | ||| ||||| | |||| | ||| || | | ||| Sbjct 218172 ATTGATTCAATATTTTTTGATAAAGTAGAAGCTATTGCAAAATTTGCCAGATATAGTAAA 218231 Query 109408 NNNNAATTTGGTGGAATACAATTAATAGTTACAGGAGATTTGTTTCAATTACCTCCGGTA 109467 |||||||||||| ||| | |||| ||||| ||||| | ||| ||||| || ||| Sbjct 218232 GAACCATTTGGTGGAATCCAAGTTATAGCAACAGGTGATTTTTATCAGTTACCACCAGTA 218291 Query 109468 AGT 109470 ||| Sbjct 218292 AGT 218294 >seq977 Length=918200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 50419 AATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 50478 |||||| || | ||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 731113 AATTTATCTGTTACTTCTCCATATAATGCTGATTTTGATGGAGATGAAATGAATTTACAC 731054 Query 50479 GTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAA 50517 ||||| ||||| || | | | | || ||| | |||||| Sbjct 731053 GTTCCACAATCTTACGAAACAAAGGCCGAAGTTCAAGAA 731015 >seq944 Length=958767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 193279 ATGGTTTTGATTCTACTGGGTCTGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTG 193338 |||||| | | ||| ||| | |||| |||| | || |||||||||||| || Sbjct 610902 ATGGTTATCAATCTCGTGGATTTGAAGTTATGTTTAATGGTCATACTGGTAAAAAGCTTC 610961 Query 193339 AAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATA 193398 || |||| || | || ||||| ||||| || ||| | || || ||||| | |||| Sbjct 610962 AAGCACAAATCTTCCTTGGTCCAACATATTATCAACGTTTAAAGCATATGGTAGATGATA 611021 Query 193399 AAATGCATGCTAGAAGTCATGGGCAAGTGACTACTT--TACATCGACAACCAAATTGTGG 193456 | || ||| | | || ||| | ||| || | || ||| ||| ||||| | || Sbjct 611022 AGATTCATAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-TCGTCAACCCGTTGAAGG 611079 Query 193457 TCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTAT-TTTAGTCC 193515 | | |||| | ||| ||| | | || || ||||||||||| || ||||| ||||| | Sbjct 611080 TAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAGGATTGTATGATTAGT-C 611138 Query 193516 ATGGTGCTACTCAATTCTTAAATGAA 193541 ||||||| |||||||||| || ||| Sbjct 611139 ATGGTGCAGCTCAATTCTTGAAGGAA 611164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628516908771840