Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1743 95.1 4e-14 seq989 87.8 6e-12 >seq1743 Length=563644 Score = 95.1 bits (104), Expect = 4e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46569 GGTaaaaaaaCAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGAT 46628 || |||||| | || || ||| |||| ||||| ||| | || |||||| |||||||||| Sbjct 497402 GGAAAAAAAGCCATATTATTTATAGATGAAATTCATAGATTTAATAAATTACAGCAAGAT 497343 Query 46629 TCGTTATTACCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAAT 46688 || |||||| | | || ||| || | ||| || ||||| || ||||| |||||| Sbjct 497342 TCTTTATTATCATGGGTAGAAAGAGGTTCTTATACTTTGATTGGAGCCACAACAGAAAAT 497283 Query 46689 CCATTTTTTGAAATTAACGGAGCTTTAATTTCTAGATCAACAATATTCAAGTTGGAACCA 46748 |||| |||| || | || | || ||| | ||||| | | |||| | || || | Sbjct 497282 CCATCTTTTAAATTAAATAGTGCATTATTAAGTAGATGTAGAGTATTTCAATTAAAAAAA 497223 Query 46749 TTAAGTAAAAAAGATAT 46765 ||||| |||| || ||| Sbjct 497222 TTAAGCAAAATAGCTAT 497206 >seq989 Length=256714 Score = 87.8 bits (96), Expect = 6e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 ||||||| | |||||||| || || || |||||||||||||| | | ||||| | || Sbjct 240196 TAATGTTTTATTAGTTGGACCAACAGGAACAGGTAAAACATTAATATCAAAAACAATTGC 240137 Query 188823 TGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTA 188882 ||| || || |||| || | | ||||||||| | || ||| |||||||||| Sbjct 240136 TGAAATACTAGATGTTCCATATTCACTAAATGATGCAACACCATTTACACAAGCTGGTTA 240077 Query 188883 TGTAGGTGAAGATG-TGGAAAACGTATTGC 188911 ||| |||||||||| || | | ||||||| Sbjct 240076 TGTTGGTGAAGATGCTGAAGTATGTATTGC 240047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591873299035712