Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq413 91.5 2e-13 seq236 91.5 2e-13 >seq413 Length=437716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||| ||| || || |||||||||||||| ||||||||| | |||||||| | Sbjct 217884 GGTGCTCACCATCTTAACGTTAACGTTCTCAACCGTGAAACTTTAGAAGATGCCATGGCT 217943 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TT 108538 || || ||||| ||||| | || || || ||||| || |||||||| ||| || || Sbjct 217944 CACCCAGAAAACTATCCAAATCTTACTATTCGTGTCTCTGGTTATGCCGTTAACTTTGTT 218003 Query 108539 AACTCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTT 108585 || | | |||||||| || || | || ||||| |||||||| || Sbjct 218004 AAAT---TAACTCCAGATCAACAAAGAGAAGTTATTGCTCGTACTTT 218047 >seq236 Length=489515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||| ||| || || || ||||| ||||| ||||||||| | ||||||||| | Sbjct 435670 GGTGCTCACCATCTTAATGTTAATGTTCTTAAGCGTGAAACTTTAGAAGATGCAATGGCT 435729 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TT 108538 ||||| ||||| ||||| | || || || ||||| ||||||||||| || || || Sbjct 435730 CATCCAGAAAACTATCCAAATCTTACTATTCGTGTTTCCGGTTATGCTGTAAACTTTGTT 435789 Query 108539 AACTCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTT 108585 || | | |||||| |||| || || ||||| ||||||||||| Sbjct 435790 AAGT---TAACTCCACAACAACAAAAGGAAGTTATTGCTCGTACCTT 435833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541133295701920