Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1776 158 3e-33 seq1057 140 8e-28 seq977 122 2e-22 seq964 107 5e-18 seq1021 93.3 1e-13 seq29 86.0 1e-11 seq1543 84.2 5e-11 seq1354 84.2 5e-11 >seq1776 Length=554945 Score = 158 bits (174), Expect = 3e-33 Identities = 302/442 (68%), Gaps = 25/442 (6%) Strand=Plus/Minus Query 279015 ATAAGCTAA--CAAAT----AAAAAGAATGATGG-CA-AGAAGACCAATAAATTATATGG 279066 |||||| || ||||| ||||||| |||||| || | |||| | | || || | || Sbjct 150281 ATAAGCAAAGTCAAATGTTAAAAAAGACTGATGGTCATAAAAGATCTAGAATTTCT--GG 150224 Query 279067 TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTT 279126 |||||||||| | |||||||| || ||||| | ||| |||| |||| || Sbjct 150223 TATTCCAAAATTAGATGATGCTAATAATGCTGGTACAAAGCACTCTAAAGATTGTGTATT 150164 Query 279127 ATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGG 279186 | ||||||| || |||||||||||| |||| || ||| ||||||| | || |||| Sbjct 150163 AATTCTTACGGAAGGAGATTCTGCTAAAGCATTAGCTATTAGTGGTTTAACAGTAGTTGG 150104 Query 279187 TCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAAT 279246 ||||||||| ||||| || ||||||||| | |||||| | | |||| ||||||| Sbjct 150103 TCGTGATAATTATGGTGTTTTTCCTTTACGTGGTAAAATGTTAAATGTTCGTGAT----- 150049 Query 279247 CACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACA 279306 | | | |||| | | | | | |||||| ||| | | | | | || || Sbjct 150048 ---------GCTTCGCATAAATCTA-TTATGGATAATGCAGAAGTTAGTGCTATTAAGCA 149999 Query 279307 AATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATGGTAA 279366 ||| | || ||| | || |||||| || || ||||| |||||| |||||||| | Sbjct 149998 AATTCTTGGTTTACAACATGGTAAAGTTTATGAAAATACAGATAGTTTAAGATATGGTCA 149939 Query 279367 AATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATACTTAA 279426 ||||| ||| || | || |||||| ||||| ||||||||| || ||| || | || Sbjct 149938 TATTATGATTATGGCTGATCAAGATACTGATGGTTCTCACATTAAGGGTTTAGTAATAAA 149879 Query 279427 TTGGGTTGATACTTTCTGGCCA 279448 || | ||| ||| |||||| Sbjct 149878 TTTCTTGGATCATTTTTGGCCA 149857 Score = 111 bits (122), Expect = 4e-19 Identities = 207/295 (70%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 ||||||||| |||||||| |||| || ||||||| ||||||| |||||||||||| Sbjct 149053 GAATTTATTAATAAAGAATTGATTCAGTTTTCTATGGCTGATGTTATTCGTTCTATTCCA 148994 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||||| | | |||||||| ||||| || | |||||| | | | ||||||||||| Sbjct 148993 TCATT-AGTTGATGGTTTTAAACCAGGTCAAAGAAAGATTCTTTATGGATGTTTCAAAAG 148935 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 ||| || || |||||| || || || | | ||||| | | |||||| | | Sbjct 148934 AAATTTAACAAGTGAAATTAAGGTAGCACAACTTACTGGTTACATCGCTGAACATACTGC 148875 Query 279985 TTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 ||| ||||| ||||| | |||| ||| | | ||||||| | | || ||||||||| Sbjct 148874 TTACCATCATGGTGAACAAAGTCT-TTCTA-CTACTATTGTTAATTTAGCTCAAGATTTT 148817 Query 280043 ATGGCTTCAAACAA-CTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 | | | || || || || | | |||||||||||||||||| ||||| Sbjct 148816 GTTGGTAGTAATAATATTCCAT-TATTAGTTCCAAATGGTCAATTTGGTACTCGT 148763 >seq1057 Length=193414 Score = 140 bits (154), Expect = 8e-28 Identities = 304/447 (68%), Gaps = 35/447 (8%) Strand=Plus/Plus Query 279015 ATAAGCTAA--CAAAT----AAAAAGAATGATGG-CA-AGAAGACCAATAAATTATATGG 279066 |||||| || ||||| ||||| | |||||| || | |||| | | || || || Sbjct 94202 ATAAGCAAAGTCAAATGTTAAAAAAAACTGATGGTCATAAAAGATCTAGAATTTCA--GG 94259 Query 279067 TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAA---TCTCAAGAATGTGC 279123 ||||||||| | ||||||||||| ||||| | || ||| |||| |||| Sbjct 94260 TATTCCAAAGTTAGATGATGCAAATAATGCTGG---TACAAAGCGCTCTAAAGATTGTGT 94316 Query 279124 TTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTAT 279183 ||| ||||||| || |||||||||||| | || || ||| ||||||| | || | Sbjct 94317 CTTAATTCTTACGGAAGGAGATTCTGCTAAAGCTTTAGCTATTAGTGGTTTAACAGTAGT 94376 Query 279184 TGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAA 279243 |||||||||||| ||||| || |||||||| | |||||| | | |||| ||||||| Sbjct 94377 TGGTCGTGATAATTATGGTGTTTTTCCTTTGCGTGGTAAAATGTTAAATGTTCGTGAT-G 94435 Query 279244 AATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATT--AATTTA 279301 ||||| |||| | | | | | |||||| ||| | | | |||| Sbjct 94436 CTTCACA-------------TAAATCCA-TTATGGATAATGCGGAAGTTAGTGCAATT-- 94479 Query 279302 AAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATAT 279361 |||||||| | || ||| | || |||||| || || ||||| | |||| ||||| Sbjct 94480 AAACAAATTCTTGGTTTACAACATGGTAAAGTTTATGAAAATACAGATAATTTAAGATAT 94539 Query 279362 GGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATA 279421 ||| | ||||| ||| || | || |||||| ||||| ||||||||| || ||| | Sbjct 94540 GGTCATATTATGATTATGGCTGATCAAGATACCGATGGTTCTCACATTAAGGGTTTAGTT 94599 Query 279422 CTTAATTGGGTTGATACTTTCTGGCCA 279448 |||||| | ||| ||| |||||| Sbjct 94600 ATTAATTTCTTGGATCATTTTTGGCCA 94626 Score = 138 bits (152), Expect = 3e-27 Identities = 211/295 (72%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 ||||||||| |||||||| |||| || ||||||| ||||||| ||||||||||||| Sbjct 95530 GAATTTATTAATAAAGAATTGATTCAATTTTCTATGGCTGATGTTATTCGTTCTATTCCT 95589 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 ||| | |||||||| |||||| || | || ||| | | ||||||| || ||| Sbjct 95590 TCATTAGTTGATGGTTTTAAACCTGGTCAAAGAAAAATTCTTTATGGTTGTTTTAAGAGA 95649 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || || |||||| |||||||| | | |||||| || | |||||| | | | Sbjct 95650 AATTTAACAAGTGAAATTAAGGTTGCTCAACTTACTGGTTATATTGCTGAACATACTGCT 95709 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 |||||||| || || | |||| ||||| | |||||||| | | || ||||||||| Sbjct 95710 TATCATCATGGCGAACAAAGTCT-TTCAA-CTACTATTGTAAATTTGGCACAAGATTTTG 95767 Query 280044 TGGCT--TCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 | | | | | | | || | | | || |||||||||||||||||| ||||| Sbjct 95768 TTGGTAGTAATAATATTTCATTATTAGTT--CCAAATGGTCAATTTGGTACTCGT 95820 >seq977 Length=918200 Score = 122 bits (134), Expect = 2e-22 Identities = 183/258 (71%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| ||| |||| ||||| ||||||||||| | ||| || || ||| || Sbjct 731635 TTACAATTCCATGTTGCGACATTTATGGATAATGATACTGCAGGTATACCGCAAGCTATG 731576 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| | ||| ||||||||||| | ||||| || | ||||||||||| ||| | Sbjct 731575 CAAAAAAGTGGAAGACCTTTAAAAGCAATTAGAGCTCGTTTAAAAGGTAAAGAAGGTAGA 731516 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||||| |||||||| ||||| || ||||| |||||| ||| | | |||||| || | Sbjct 731515 ATTCGTGGTAATCTTATGGGTAAGCGTGTAGATTTTTCAGCACGTACTGTAATTACTGGT 731456 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAA 305123 ||| | | ||| | || || || | || || |||| ||| ||||| ||| ||| Sbjct 731455 GATCCAAATATTTCTATTGATCAAGTTGGTGTACCAA--GAAGTATTGCAAGAAATTTAA 731398 Query 305124 CATTTCCAGAGAAAGTTA 305141 |||| || || | ||||| Sbjct 731397 CATTCCCTGAAACAGTTA 731380 Score = 120 bits (132), Expect = 7e-22 Identities = 196/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| | ||||| ||||| |||| | |||||| | ||||| ||| | || |||||| | Sbjct 731221 CATATTAATGATGGTGATTTGGTTATTTTCAATCGTCAACCTTCATTACACAAAATGAGT 731162 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTG 305426 ||||||| ||| ||| | || || ||| | ||| || ||||| |||||| || || Sbjct 731161 ATGATGGGTCACAAAATTAAGGT--TATGCCATATTCTACTTTTCGTTTAAATTTATCTG 731104 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || |||||||| |||||||||||||||||||||||| | || || || |||| Sbjct 731103 TTACTTCTCCATATAATGCTGATTTTGATGGAGATGAAATGAATTTACACGTTCCACAAT 731044 Query 305487 CAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTC 305546 | | | |||| | | ||| | |||||| ||| ||| | |||| || | |||| Sbjct 731043 CTTACGAAACAAAGGCCGAAGTTCAAGAAATCTGTATGGTACCTAAACAAATTGTATCTC 730984 Query 305547 CTGCTATAAATGCTCCAATAATCGAATTTGTACAAGATA 305585 | |||| ||| |||| | |||||||||||| Sbjct 730983 CACAAGCAAATAAGCCAGTAATGGGTATTGTACAAGATA 730945 >seq964 Length=283865 Score = 107 bits (118), Expect = 5e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 167211 AAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTC 167270 || |||||| | || || || || |||| | | ||||||||||||| |||||| Sbjct 219521 AATGAGCACATCAACGTTTCATCAACACTCATCATAGCACCAGCATTATCAAATTCACCA 219462 Query 167271 GCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCA 167330 ||||||||||||||| |||| ||||| |||| ||| || ||| |||||||| || Sbjct 219461 CAATAATTTGGTGCTGAGAATAATGTAACCAATTGACGTTTAGCAAAGAATTCATATCCG 219402 Query 167331 TCTTCAACAACTTCATGGGCACG-TATTACAAGTTCAACTCCTAtttttttAAGAA 167385 ||||||||||||| ||| ||||| | ||| | || || | ||||| |||||| Sbjct 219401 TCTTCAACAACTTGATGAGCACGACAAATCAAATCTAAATCATGTTTTTGTAAGAA 219346 >seq1021 Length=902744 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||||||| ||||| ||||||| ||| | || ||| || ||||| |||||| ||| Sbjct 32092 ATTTCAAATGAGCAAAGTAAATCTTCATTTACTAGCATAACTGCACCATTATTATCAAAT 32033 Query 167265 TCATTCGCATAATTTGGTGC--TGAAAATACAGTAACTAATTTACGATTGAAAAATAATT 167322 ||| |||||||||||| |||||| | || ||||| | | ||| ||| |||| Sbjct 32032 TCACCACAATAATTTGGTGCACTGAAAA--CTGTTACTAAAATTCTATTTCCAAAGAATT 31975 Query 167323 CATAACCATCTTCAACAAC 167341 ||||||||||||||||||| Sbjct 31974 CATAACCATCTTCAACAAC 31956 >seq29 Length=15422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 167205 ATTTCAAAAGAGCACCTA-AAATCTTTATTAATTATCATTACACCACCAGCATTATCGAA 167263 |||||||| ||||| ||||||| ||| | || ||| || ||||| |||||| || Sbjct 12391 ATTTCAAATGAGCAAAAGTAAATCTTCATTTACTAGCATAACTGCACCATTATTATCAAA 12332 Query 167264 TTCATTCGCATAATTTGGTGC--TGAAAATACAGTAACTAATTTACGATTGAAAAATAAT 167321 |||| |||||||||||| |||||| | || ||||| | | ||| ||| ||| Sbjct 12331 TTCACCACAATAATTTGGTGCACTGAAAA--CTGTTACTAAAATTCTATTTCCAAAGAAT 12274 Query 167322 TCATAACCATCTTCAACAAC 167341 |||||||||||||||||||| Sbjct 12273 TCATAACCATCTTCAACAAC 12254 >seq1543 Length=617088 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||||||| || || ||||||| ||| | ||| ||| |||| |||||| ||| Sbjct 350074 ATTTCAAATGAACAAAGTAAATCTTCATTTACATGCATAACAGCACCGTTATTATCAAAT 350133 Query 167265 TCATTCGCATAATTTGGTGC--TGAAAATACAGTAACTAATTTACGATTGAAAAATAATT 167322 ||| |||||| ||||| |||||| |||||||||| | | ||| ||| |||| Sbjct 350134 TCACCACAATAATTAGGTGCACTGAAAA--CAGTAACTAAAATTCTATTACCAAAGAATT 350191 Query 167323 CATAACCATCTTCAACAAC 167341 ||||||||||||||||||| Sbjct 350192 CATAACCATCTTCAACAAC 350210 >seq1354 Length=681271 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | || |||||| ||||||||||| ||||||||||| |||||| Sbjct 256325 ACCTTTAGATTCAATGAATGTTGTTGTACTCCTTATAATGCTGATTTTGATGGGGATGAA 256384 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | ||| | |||||| Sbjct 256385 ATGAATCTTCATCTTCCTCAA 256405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186785140215059