Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq413 84.2 2e-11 seq236 84.2 2e-11 >seq413 Length=437716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 ||| ||| ||||| |||||||||||||| || |||||| | |||||||| | | Sbjct 217885 GTGCTCACCATCTTAACGTTAACGTTCTCAACCGTGAAACTTTAGAAGATGCCATGGCTC 217944 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TTA 109223 | || ||||| ||||| | || || || ||||| || |||||||| ||| || ||| Sbjct 217945 ACCCAGAAAACTATCCAAATCTTACTATTCGTGTCTCTGGTTATGCCGTTAACTTTGTTA 218004 Query 109224 ACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTT 109269 | | | ||||| || || || | || ||||| |||||||| || Sbjct 218005 AAT---TAACTCCAGATCAACAAAGAGAAGTTATTGCTCGTACTTT 218047 >seq236 Length=489515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 ||| ||| ||||| || ||||| ||||| || |||||| | ||||||||| | | Sbjct 435671 GTGCTCACCATCTTAATGTTAATGTTCTTAAGCGTGAAACTTTAGAAGATGCAATGGCTC 435730 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TTA 109223 |||| ||||| ||||| | || || || ||||| ||||||||||| || || ||| Sbjct 435731 ATCCAGAAAACTATCCAAATCTTACTATTCGTGTTTCCGGTTATGCTGTAAACTTTGTTA 435790 Query 109224 ACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTT 109269 | | | ||||| |||| || || ||||| ||||||||||| Sbjct 435791 AGT---TAACTCCACAACAACAAAAGGAAGTTATTGCTCGTACCTT 435833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386868223304041