Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1521 104 2e-17 seq1454 96.9 3e-15 seq952 89.7 5e-13 seq1232 84.2 2e-11 >seq1521 Length=627264 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | || | |||||| ||| |||||||||||||||||||| | Sbjct 324350 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCAGAA 324291 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || | |||||||| ||||| || | || || ||||| | ||| Sbjct 324290 AGAGTACGACCATCTTCTAATTGCTTACCGGCAAAGATAAGACGTTGTTGGTCTGGTGGA 324231 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| || | | || | | |||||| ||||| ||| Sbjct 324230 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 324171 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || ||||| |||||||| | ||||| ||||| || ||||| Sbjct 324170 TCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 324124 >seq1454 Length=643854 Score = 96.9 bits (106), Expect = 3e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 35486 TTTTATACAATCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTC 35545 ||||||||| | || | || |||||||||||| | | || || || |||| ||| Sbjct 198281 TTTTATACATTTATTTTTTAATTTCCACCACGAAGACGTAAAACTAAGTGTAGAGTAGAT 198222 Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| |||||||| | | || || | || || | |||||||| ||||| Sbjct 198221 TCCTTTTGAATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGCTTACCTGCAAAA 198162 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || || || || | |||| | ||||| || ||||| ||| | | || Sbjct 198161 ATAAGACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCCTTAACATTT 198102 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || ||||| || || | ||||| || ||||| || |||||||| ||| Sbjct 198101 TCAATGGTATCAGAAGATTCAACTTCAAGAGTGATAGTCTTACCAGTTAAAGTTTTAACA 198042 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 198041 AAAATTTGCAT 198031 >seq952 Length=293713 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | || | |||||| ||| |||||||||||||||||||||| Sbjct 167335 CCACCACGTAAACGAAGAACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAATCGGAA 167276 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || | |||||||| || || || | || || ||||| | || Sbjct 167275 AGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGG 167216 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||| || | | || | | |||||| ||||| ||| Sbjct 167215 ATACCTTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCGACC 167156 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || |||||||| | ||||| ||||| || ||||| Sbjct 167155 TCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACAAAAATTTGCAT 167109 >seq1232 Length=735369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 35498 ATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATG 35557 |||| || |||||||||||| | | || || || || | ||| |||||||||||| Sbjct 63528 ATCTTTTAATTTCCACCACGAAGACGTAAGACTAAGTGGAGAGTAGATTCCTTTTGAATG 63469 Query 35558 TTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGC 35617 |||||||| | | |||| | || || | |||||||| ||||| || | || || Sbjct 63468 TTGTAATCAGAAAGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGT 63409 Query 35618 TGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTC 35676 ||||| | ||| | | ||||| | | ||| ||| || || | | || | | ||||| Sbjct 63408 TGGTCTGGAGGGATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATTTTCAATGGTGTC 63350 Query 35677 GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || | || || || ||||| || ||||| || || || || ||||| Sbjct 63349 AGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGTTAAAGTCTTAACGAAGATTTGCAT 63290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783350080520