Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1343 93.3 6e-14 >seq1343 Length=682584 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 161319 AGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACAC 161378 |||| || || ||||| | ||||| || ||||| | ||||| || |||| ||||| Sbjct 152328 AGGCTTCTACAAGTGAACTTTATGGTAAAGTTCAAGAAATTCCACAAAATGAAAAAACAC 152269 Query 161379 CTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTA 161434 | ||||| ||||| ||||| ||||| ||||||||| | |||| |||||||||||| Sbjct 152268 CATTCTATCCACGTTCTCCTTATGGTGTAGCTAAATTATATGCCTATTGGATTGTA 152213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729913003225720