Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq922 100 2e-16 seq1321 95.1 1e-14 >seq922 Length=344319 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411 |||| || ||||| || || ||| || || |||||||| || | | || ||||| Sbjct 53031 TTTTACTATATGGACCGCCAGGTACCGGTAAGACATTAATGGCACGTCAGATTGGTAAAA 52972 Query 19412 TACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAG 19471 | |||| || || | ||||| |||||||| ||||| |||||||||||||| | Sbjct 52971 TGCTTAATGCACGGGAACCAATTATTGTTAATGGTCCAGAAATTTTAAATAAATATGTTG 52912 Query 19472 GTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521 ||||||| ||||||||| | || || |||||||| |||||| ||||| Sbjct 52911 GTCAATCTGAAGAAAATATCAGAAAGTTATTTGCTGAAGCTGAAAAAGAA 52862 >seq1321 Length=689638 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411 |||| | ||||| ||||| ||| ||| || |||||||| || | || || |||| Sbjct 152692 TTTTATTATATGGTCCACCAGGTACTGGTAAGACATTAATGGCACGTCAAATTGGTAAGA 152633 Query 19412 TACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAG 19471 | |||| | | || | ||||| |||||||| ||||| || ||||||||||| | Sbjct 152632 TGCTTAATGCTCGAGAACCAATTATTGTTAATGGTCCAGAAATTTTGAATAAATATGTTG 152573 Query 19472 GTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521 ||||||| ||||||||| | || || ||||| || |||||| ||||| Sbjct 152572 GTCAATCTGAAGAAAATATTAGAAAATTATTTGCAGAAGCTGAAAAAGAA 152523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447188773095