Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1057 105 3e-18 seq1776 82.4 4e-11 >seq1057 Length=193414 Score = 105 bits (116), Expect = 3e-18 Identities = 200/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| ||||||||||| | |||||| |||||| || ||||| ||||| Sbjct 95819 CGAGTACCAAATTGACCATTTGGAACTAATAATGAAATATTATTACTACCAACAAAATCT 95760 Query 65147 TGAGCCA---TTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || |||| || | ||| | | || | | ||| ||| || |||||||| | | | Sbjct 95759 TGTGCCAAATTTACAATAGTAGTTGAA---AGACTTTGTTCGCCATGATGATAAGCAGTA 95703 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTA 65263 ||||||| | ||| ||| ||| ||||||||| || ||||| |||||||||| | ||| Sbjct 95702 TGTTCAGCAATATAACCAGTAAGTTGAGCAACCTTAATTTCACTTGTTAAATTTCTCTTA 95643 Query 65264 AATGCAGAATACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAATG 65323 || | ||| | ||||| | | || | ||| || ||||| | ||| |||||| Sbjct 95642 AAACAACCATAAAGAATTTTTCTTTGACCAGGTTTAAAACCATCAACTAATGAAGGAATA 95583 Query 65324 CTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTC 65376 | | |||| | || || || || |||||||| ||||||||||| Sbjct 95582 GAACGAATAACATCAGCCATAGAAAATTGAATCAATTCTTTATTAATAAATTC 95530 >seq1776 Length=554945 Score = 82.4 bits (90), Expect = 4e-11 Identities = 127/180 (71%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 || || ||||| ||||||||||| | |||||| |||||| || ||||| ||||| Sbjct 148764 CGAGTACCAAATTGACCATTTGGAACTAATAATGGAATATTATTACTACCAACAAAATCT 148823 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 ||||| | | ||| | | | | ||| |||||| ||||| || | | |||| Sbjct 148824 TGAGCTAAATTAACAATAGTAGTAGAAAGACTTTGTTCACCATGATGGTAAGCAGTATGT 148883 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAA-TTCTTTTTAAA 65265 |||| || || ||| ||| ||| || || || ||||| |||||||| ||||||| ||| Sbjct 148884 TCAGCGATGTAACCAGTAAGTTGTGCTACCTTAATTTCACTTGTTAAATTTCTTTTGAAA 148943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235674775195350