Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq413 84.2 2e-11 seq236 84.2 2e-11 >seq413 Length=437716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 101922 GGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 101981 |||| ||| || || |||||||||||| | ||||||||| | |||||||| | Sbjct 217884 GGTGCTCACCATCTTAACGTTAACGTTCTCAACCGTGAAACTTTAGAAGATGCCATGGCT 217943 Query 101982 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TT 102038 || || ||||| ||||| | || || || ||||| || |||||||| ||| || || Sbjct 217944 CACCCAGAAAACTATCCAAATCTTACTATTCGTGTCTCTGGTTATGCCGTTAACTTTGTT 218003 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTC 102086 || | | ||||| || || || | || ||||| |||||||| ||| Sbjct 218004 AAAT---TAACTCCAGATCAACAAAGAGAAGTTATTGCTCGTACTTTC 218048 >seq236 Length=489515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 101922 GGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 101981 |||| ||| || || || ||||| ||| | ||||||||| | ||||||||| | Sbjct 435670 GGTGCTCACCATCTTAATGTTAATGTTCTTAAGCGTGAAACTTTAGAAGATGCAATGGCT 435729 Query 101982 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TT 102038 ||||| ||||| ||||| | || || || ||||| ||||||||||| || || || Sbjct 435730 CATCCAGAAAACTATCCAAATCTTACTATTCGTGTTTCCGGTTATGCTGTAAACTTTGTT 435789 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTC 102086 || | | ||||| |||| || || ||||| |||||||||||| Sbjct 435790 AAGT---TAACTCCACAACAACAAAAGGAAGTTATTGCTCGTACCTTC 435834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534656642968160