Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq413 91.5 2e-13 seq236 91.5 2e-13 >seq413 Length=437716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 131516 AAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAA---AGCGAACT 131572 || |||||||||||||| || | || || || ||||| | | |||| || ||| Sbjct 218047 AAAGTACGAGCAATAACTTCTCTTTGTTGATCTGGAGTTA---ATTTAACAAAGTTAACG 217991 Query 131573 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 131632 |||||||| || ||||| || || || | ||||| ||||| || || | |||||| Sbjct 217990 GCATAACCAGAGACACGAATAGTAAGATTTGGATAGTTTTCTGGGTGAGCCATGGCATCT 217931 Query 131633 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 131679 || | ||||||||| |||||||||||||| || || ||| |||| Sbjct 217930 TCTAAAGTTTCACGGTTGAGAACGTTAACGTTAAGATGGTGAGCACC 217884 >seq236 Length=489515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 131516 AAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAA---AGCGAACT 131572 ||||||||||||||||| || || |||| ||||| | | |||| || || Sbjct 435833 AAGGTACGAGCAATAACTTCCTTTTGTTGTTGTGGAGTTA---ACTTAACAAAGTTTACA 435777 Query 131573 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 131632 ||||||||||| ||||| || || || | ||||| ||||| ||||| | ||||||| Sbjct 435776 GCATAACCGGAAACACGAATAGTAAGATTTGGATAGTTTTCTGGATGAGCCATTGCATCT 435717 Query 131633 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 131679 || | ||||||||| ||||| ||||| || || || ||| |||| Sbjct 435716 TCTAAAGTTTCACGCTTAAGAACATTAACATTAAGATGGTGAGCACC 435670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535213430307920