Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq413 95.1 1e-14 seq236 86.0 7e-12 seq1032 82.4 8e-11 >seq413 Length=437716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 123122 TCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCC 123181 ||| ||||| |||||||||||||| ||||||||| |||||||||| | || || Sbjct 217889 TCACCATCTTAACGTTAACGTTCTCAACCGTGAAACTTTAGAAGATGCCATGGCTCACCC 217948 Query 123182 AGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCT---TTAACTC 123238 |||||| ||||| | || || || ||||| ||||||||||| ||| || |||| | Sbjct 217949 AGAAAACTATCCAAATCTTACTATTCGTGTCTCTGGTTATGCCGTTAACTTTGTTAAAT- 218007 Query 123239 TCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTT 123280 | ||||| || || || | || ||||| ||||| || || Sbjct 218008 --TAACTCCAGATCAACAAAGAGAAGTTATTGCTCGTACTTT 218047 >seq236 Length=489515 Score = 86.0 bits (94), Expect = 7e-12 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 123122 TCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCC 123181 ||| ||||| || ||||| ||||| ||||||||| ||||||||||| | ||||| Sbjct 435675 TCACCATCTTAATGTTAATGTTCTTAAGCGTGAAACTTTAGAAGATGCAATGGCTCATCC 435734 Query 123182 AGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCT---TTAACTC 123238 |||||| ||||| | || || || ||||| || |||||||| || || |||| | Sbjct 435735 AGAAAACTATCCAAATCTTACTATTCGTGTTTCCGGTTATGCTGTAAACTTTGTTAAGT- 435793 Query 123239 TCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTT 123280 | ||||| |||| || || ||||| ||||| ||||| Sbjct 435794 --TAACTCCACAACAACAAAAGGAAGTTATTGCTCGTACCTT 435833 >seq1032 Length=894662 Score = 82.4 bits (90), Expect = 8e-11 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 123122 TCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCC 123181 ||| ||||| || ||||||||||| |||||||| |||||||||| | || || Sbjct 446899 TCACCATCTTAATGTTAACGTTCTTAAGCGTGAAACCTTAGAAGATGCTATGGCTCACCC 446840 Query 123182 AGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCT---TTAACTC 123238 |||||| ||||| | || ||||| ||||| |||||||| || ||| || |||| | Sbjct 446839 AGAAAACTATCCAAACCTTACCATTCGTGTTTCTGGTTACGCTGTTAACTTCGTTAAGT- 446781 Query 123239 TCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTT 123280 | ||||| | || || || ||||| ||||| ||||| Sbjct 446780 --TAACTCCAGCTCAACAAAAGGAAGTTATTGCTCGTACCTT 446741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539926923132440