Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq413 109 5e-19 >seq413 Length=437716 Score = 109 bits (120), Expect = 5e-19 Identities = 232/343 (68%), Gaps = 5/343 (1%) Strand=Plus/Minus Query 118820 CTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCT 118879 || |||||| || |||||| | |||||| ||||||| | || || | ||| || | Sbjct 66000 CTATATATTTAGCTCCAAAATGACGCCATTGCCAACCATATATTGGTCCTAAATCACCTT 65941 Query 118880 GGGACCTAAAATCTAAACCTACTTTTCTCT-GAAATTCTTTTGACCCATTAGCATTCCAA 118938 || | |||||||| |||| || ||||||| || |||||| | | ||| Sbjct 65940 CTTCTCTTTCAGTTAAACCTA-TTTTATCAAGAAATTCACGAGAACCATTACCTTCCCAT 65882 Query 118939 ATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGA 118998 ||| ||| |||||||||| ||| || | ||| ||| ||||| ||||||| Sbjct 65881 ATATGAACACCTTTTTTTGATAGAATTTTTCCATCAGTATCACCTCTTAAGAACCAAAAT 65822 Query 118999 AGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGACCT 119058 | ||||| |||| ||||| |||||||| |||| ||||| || ||||| || ||| || Sbjct 65821 AATTCCTCTGCAACACCTCTAAAAAAAACTCTTTTCGTTGTTAATAGTGGGAAATGATCT 65762 Query 119059 CTAAGTGAATATCTTGTTTG---TGTTCCAAAAATAGACAGAGTCCCAACACCTGTTCTA 119115 | | ||| ||||| | | || |||||| |||| || || |||||||||| Sbjct 65761 TTTAATGAGAATCTTAATGGATTTGGTCCAAATATAGCTTTTGTTCCTGTACCTGTTCTA 65702 Query 119116 TCATCTCTCTTGATACCCTGCTCTAAAATAGTTCTAATTAGAT 119158 |||| |||| | |||| |||| ||| || | |||| || Sbjct 65701 TCATTTCTCATCTCTCCCTCATCTATAATTTTTTTTATTAAAT 65659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414467611437916