Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq952 98.7 7e-16 seq1265 93.3 3e-14 seq585 93.3 3e-14 seq1521 89.7 4e-13 >seq952 Length=293713 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || || |||||| |||| |||||| | || Sbjct 167109 ATGCAAATTTTTGTCAAAACCCTTACGGGTAAGACTATTACCCTTGAGGTCGAATCCTCC 167168 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| || || || || |||||| | || || || Sbjct 167169 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGATAAGGAAGGTATCCCACCAGACCAA 167228 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || || ||||| || ||||| || || | || | | |||||||||||| Sbjct 167229 CAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACTCTTTCCGATTACAAC 167288 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||||| ||| | ||| | ||||| ||||| || Sbjct 167289 ATTCAAAAGGAATCTACTTTACATCTTGTTCTTCGTTTACGTGGTGG 167335 >seq1265 Length=1280584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| || ||| || | || || ||| | Sbjct 257481 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACTATCACTTTAGAAGTTGAATTTTCT 257422 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||| || || ||||||||| |||| || | Sbjct 257421 GATACCATTGAAAAT--GTCAAAGCAAAGATTCAAGATAAAGAAGGTATTCCACCAGACC 257364 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| ||||||||||| || || | | | | | || ||||| | Sbjct 257363 AACAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTATA 257304 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| |||| | ||||| ||||| ||| | ||||| || Sbjct 257303 ATATTCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGTGGTGG 257255 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| || ||||| |||| || ||| | Sbjct 265157 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACCATTACCCTTGAAGTTGAATCTTCT 265098 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || || ||||||||| |||| || | Sbjct 265097 GATACCATTGAAAAT--GTCAAGGCCAAGATTCAAGATAAAGAAGGTATTCCACCAGATC 265040 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| ||||||||||| || || | | | | | || ||||||| Sbjct 265039 AACAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCTGATTACA 264980 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| |||| | ||||| ||||| ||| | ||||| || Sbjct 264979 ATATTCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGTGGTGG 264931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| |||||||||||||||||| || ||| | ||||| || || || | || || Sbjct 257717 AATA-TAAAATGCAAATTTTTGTCAAGACTTTAACTGGTAAGACCATCACTTTAGAAGTT 257659 Query 27841 GAAAGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTC 27898 ||| | || | || | ||| |||||| ||||| || ||||||||| | | Sbjct 257658 GAATCTTCTGATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATCC 257601 Query 27899 CGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGT 27958 | || || ||||| | |||||||| ||||||||||| || || | | | | | Sbjct 257600 CACCAGATCAACAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGTAGAACTCTTT 257541 Query 27959 CCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || |||||||| |||| | ||||| ||||| ||| | ||||| || Sbjct 257540 CAGATTATAATATTCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGTGGTGG 257483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| || ||||| |||| || ||| | Sbjct 264929 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACCATTACCCTTGAAGTTGAATCTTCT 264870 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| ||||| || ||||||||| | || || | Sbjct 264869 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATC 264812 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || |||||||| || || | || | | || ||||| | Sbjct 264811 AACAACGTCTTATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTCTTTCAGATTATA 264752 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| |||| | ||||| ||||| ||| | ||||| || Sbjct 264751 ATATTCAAAAAGAATCCACTCTTCATTTAGTTTTACGTCTTCGTGGTGG 264703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| || ||||| |||| || ||| | Sbjct 265385 ATGCAAATTTTTGTCAAGACTTTAACTGGAAAGACCATTACCCTTGAAGTTGAATCTTCT 265326 Query 27850 GA---CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || | ||| |||||| ||||| || ||||||||| |||| || Sbjct 265325 GATACCGTTG-AAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGAT 265269 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | |||||||| || |||||||| || || | || | | || ||||| Sbjct 265268 CAACAACGTCTTATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTAT 265209 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| | ||||| ||||| ||| | ||||| || Sbjct 265208 AATATTCAAAAAGAATCCACACTTCATTTAGTTTTACGTCTTCGTGGTGG 265159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| ||| || || | || || || | | Sbjct 265613 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACCATCACTTTAGAAGTTGAGTCCTCT 265554 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| ||||| || ||||||||| |||| || | Sbjct 265553 GATACCATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGACC 265496 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || |||||||| || || | || | | || ||||| | Sbjct 265495 AACAACGTCTTATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTATA 265436 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| ||| | ||||| ||||| ||| | ||||| || Sbjct 265435 ATATTCAAAAAGAATCCACACTTCATTTAGTTTTACGTCTTCGTGGTGG 265387 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| |||||||||||||||||| || ||| | ||||| || || || | || || Sbjct 261355 AATA-TAAAATGCAAATTTTTGTCAAGACTTTAACTGGTAAGACCATCACTTTAGAAGTT 261297 Query 27841 GAAAGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTC 27898 ||| | || | || | ||| |||||| ||||| || ||||||||| | | Sbjct 261296 GAATCTTCTGATACTATTGAAAAT--GTCAAAGCTAAAATTCAAGATAAAGAAGGTATCC 261239 Query 27899 CGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGT 27958 | || || ||||| | |||||||| ||||||||||| || || | | | | | Sbjct 261238 CACCAGATCAACAACGTCTTATTTTTGCAGGAAAACAATTAGAAGATGGTAGAACTCTTT 261179 Query 27959 CCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || |||||||| ||| | ||||| ||||| ||| | ||||| || Sbjct 261178 CAGATTATAATATTCAAAAAGAATCTACTCTCCATTTAGTTTTACGTCTTCGTGGTGG 261121 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 |||||||||||||||||| |||||| | ||||| || ||| || | || || ||| Sbjct 265845 TAAAATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACTATCACTTTAGAAGTTGAATC 265786 Query 27846 CACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | | || || | ||| |||||| || || || ||||||||| |||| Sbjct 265785 TTCTGATACTATTGAAAAT--GTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCA 265728 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| | |||||||| || |||||||| || || | | | | || ||| Sbjct 265727 GACCAACAACGTCTTATTTTTGCAGGTAAACAATTAGAAGATGGTAGAACTCTTTCTGAT 265668 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || |||||||| ||| | || | ||| | ||||| ||||| || Sbjct 265667 TACAATATTCAAAAAGAATCTACTCTTCACCTTGTTCTTCGTTTACGTGGTGG 265615 >seq585 Length=8358 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || || ||| | ||||| ||| |||||| |||| || ||| | Sbjct 3900 AAAATGCAAATCTTCGTTAAGACTTTAACTGGTAAAACTATTACTCTTGAAGTTGAATCC 3959 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || | ||| |||||| ||||| || ||||||||| |||| | Sbjct 3960 TCAGATACTATTGAAAAT--GTCAAAGCTAAAATCCAAGATAAAGAAGGTATTCCACCAG 4017 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | |||||||| || |||||||| || || | | | | | || |||| Sbjct 4018 ACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTTTCTGATT 4077 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || |||||||| ||| | || || ||||| ||| | ||||| || Sbjct 4078 ATAATATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTTCGTGGTGG 4129 >seq1521 Length=627264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| ||||| || || ||||| |||| || ||| | || Sbjct 324124 ATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTTGAATCCTCC 324183 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| || || || || |||||| |||| || || Sbjct 324184 GACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAA 324243 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || |||||||| || ||||| || || | || | | || ||||||||| Sbjct 324244 CAACGTCTTATCTTTGCCGGTAAGCAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 324303 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||||| ||| | ||| | ||||| ||||| || Sbjct 324304 ATTCAAAAGGAATCTACTTTACATCTTGTTCTTCGTTTACGTGGTGG 324350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854510864213