Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1265 91.5 1e-13 seq585 91.5 1e-13 >seq1265 Length=1280584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| || ||||| || ||| |||||||| ||||||||||| | ||| || || | Sbjct 265399 CGTAAAACTAAATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAAAGAGTACGACCA 265458 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| |||||||| || ||||| | || | | ||||| Sbjct 265459 TCTTCTAATTGTTTACCTGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 265518 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||||| ||||| | | | ||||| ||||| || || | ||||| Sbjct 265519 TCTTGAATTTTAGCTTTGACATTTTCAATGGTATCAGAGGACTCAACTTCTAAAGTGATG 265578 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || || ||||| |||||||| Sbjct 265579 GTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 265613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| || ||||| || ||| |||||||| ||||||||||| | ||| |||| | | Sbjct 257267 CGTAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTATAATCTGAAAGAGTTCTTCCA 257326 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| |||||||| || ||||| | || | | ||||| Sbjct 257327 TCTTCTAATTGTTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 257386 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| | | || ||||| | | | ||||| | || || || | ||||| Sbjct 257387 T-CTTGAATCTTTGCTTTGACATTTTCAATGGTATCAGAAAATTCAACTTCTAAAGTGAT 257445 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | ||||| || | || || ||||| |||||||| Sbjct 257446 AGTCTTTCCAGTTAAAGTCTTGACAAAAATTTGCAT 257481 >seq585 Length=8358 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| || || || || || |||||||| ||||||||||| | ||| |||| | | Sbjct 4117 CGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCA 4058 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| |||||||| || ||||| | || | | ||||| Sbjct 4057 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 3998 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||||| | | | ||||| || || || || | || ||| Sbjct 3997 TCTTGGATTTTAGCTTTGACATTTTCAATAGTATCTGAGGATTCAACTTCAAGAGTAATA 3938 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 |||| || || | || ||||| ||||||||||| |||| Sbjct 3937 GTTTTACCAGTTAAAGTCTTAACGAAGATTTGCATTTTTA 3898 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| || || || || ||| |||||||| ||||| ||||| | ||| |||| | | Sbjct 4345 CGTAAAACTAAGTGAAGAGTGGATTCTTTTTGAATATTGTAATCAGAAAGAGTTCTTCCA 4286 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| |||||||| || ||||| | || | | ||||| Sbjct 4285 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTA 4226 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||||| | | | || || || || || || | || || Sbjct 4225 TCTTGGATTTTAGCTTTGACATTTTCAATTGTGTCAGAAGATTCAACTTCAAGAGTAATG 4166 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || | |||||||||||||||||||| Sbjct 4165 GTCTTACCAGTTAAAGTTTTAACAAAGATTTGCAT 4131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536077376747