Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq236 91.5 2e-13 >seq236 Length=489515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 |||| ||| || || || ||||||||||| ||||||||| | ||||||||| | Sbjct 435670 GGTGCTCACCATCTTAATGTTAATGTTCTTAAGCGTGAAACTTTAGAAGATGCAATGGCT 435729 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCT---TT 142657 ||||||||||| ||||| | | || || ||||| ||||||||||| || || || Sbjct 435730 CATCCAGAAAACTATCCAAATCTTACTATTCGTGTTTCCGGTTATGCTGTAAACTTTGTT 435789 Query 142658 AACTCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTT 142704 || | | ||||| |||| || || ||||| ||||||||||| Sbjct 435790 AAGT---TAACTCCACAACAACAAAAGGAAGTTATTGCTCGTACCTT 435833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542646861286440