Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neocallimastix_20californiae_20[genbank_20GCA_5F002104975.1_202017- 04-20] 1,819 sequences; 193,032,486 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1521 114 9e-21 seq952 105 5e-18 seq1043 98.7 7e-16 seq1454 89.7 4e-13 seq502 89.7 4e-13 seq1232 86.0 5e-12 seq1259 84.2 2e-11 >seq1521 Length=627264 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| ||||||||||| | || || | || || | ||||| ||||||||| Sbjct 324314 TCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGCTTACCGGCAAAG 324255 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || || |||| || | ||||||||| || ||||| || | || Sbjct 324254 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTT 324195 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| |||||| ||||| | ||||||||||| ||||| ||||| || || Sbjct 324194 TCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACA 324135 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 324134 AAGATTTGCAT 324124 >seq952 Length=293713 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| ||||||||||||| || || | || || | ||||| ||||| ||| Sbjct 167299 TCCTTTTGAATGTTGTAATCGGAAAGAGTACGACCATCTTCTAATTGCTTACCGGCGAAG 167240 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || || |||| || | ||||||||| || ||||| || | || Sbjct 167239 ATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTTAGCTTTGACATTT 167180 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| |||||| ||||| | ||||| ||||| ||||| ||||| || || Sbjct 167179 TCAATAGTGTCGGAGGATTCGACCTCAAGGGTAATAGTCTTACCCGTAAGGGTTTTGACA 167120 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 167119 AAAATTTGCAT 167109 >seq1043 Length=1347342 Score = 98.7 bits (108), Expect = 7e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| || | || || || || || | ||||| ||||| |||| Sbjct 570865 CCTTTTGGATGTTGTAGTCAGAAAGAGTACGGTCATCTTCTAATTGCTTACCGGCGAAGA 570806 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | ||| || ||||||| || | |||||||||||| ||||| | ||| | | Sbjct 570805 TAAGACGTTGTTGATCTGGTGGAATACCTTCCTTTTCTTGAATCTTATTCTTAACATTAA 570746 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || |||||| || || ||||| | ||||| |||||||| || |||||||| || | Sbjct 570745 CAATACTGTCGGAAGACTCGACCTCAAGGGTAATAGTCTTTCCTGTAAGGGTCTTTACAA 570686 Query 44328 AGAT 44331 | || Sbjct 570685 AAAT 570682 >seq1454 Length=643854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || | |||||| ||| |||||||| ||||||||||| | || || | || Sbjct 191099 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCT 191158 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || | ||||| || ||||| || | ||| || ||||||| || | ||||||||| || Sbjct 191159 TCTAATTGCTTACCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 191218 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | || | || || || | ||||| || || | ||||| ||| Sbjct 191219 TGAATCTTAGCCTTAACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTAATAGTC 191278 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| ||||| |||||||| Sbjct 191279 TTACCAGTTAATGTCTTTACGAAAATTTGCAT 191310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || | |||||| ||| |||||||| ||||||||||| | || || | || Sbjct 190871 AAAACTAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCT 190930 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || | ||||| || ||||| || | ||| || ||||||| || | ||||||||| || Sbjct 190931 TCTAATTGCTTACCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCCTTATCT 190990 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | || | || || |||| ||||| || || | || || ||| Sbjct 190991 TGAATCTTAGCCTTAACATTTTCAATAGTATCGGAAGATTCAACTTCAAGAGTGATAGTC 191050 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || || |||||||| Sbjct 191051 TTACCAGTTAAAGTCTTAACAAAAATTTGCAT 191082 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 44135 TGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGC 44194 ||||| ||| |||||||| ||||||||||| | || || | || || | ||| Sbjct 189740 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGC 189799 Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || || ||||| || | ||| || ||||||| || | ||||||||| || ||||| Sbjct 189800 TTACCAGCAAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTA 189859 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||| | || | ||||| || | ||||| || || | || || ||||| || || Sbjct 189860 GCCTTAACATTTTCAATGGTATCAGAAGATTCAACTTCTAAGGTGATAGTCTTACCAGTT 189919 Query 44315 AGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || |||||||| Sbjct 189920 AAAGTCTTAACAAAAATTTGCAT 189942 >seq502 Length=415512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||| ||||||||||| | ||||| | || || || | || || ||||| || Sbjct 365527 CCTTTTGAATGTTGTAATCAGAAAGAGTT--CTGTCATCTTCTAATTGTTTACCGGCGAA 365470 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || ||||| || || || | || | |||||||||||| ||||| | ||| | | Sbjct 365469 AATTAAACGTTGTTGGTCAGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATT 365410 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || |||||| || || ||||| | || || |||||||| || ||||| || || Sbjct 365409 GACAATACTGTCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGAC 365350 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 365349 GAAAATTTGCAT 365338 >seq1232 Length=735369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||||| ||||||||||| | ||||| | | || || | ||||| || |||| Sbjct 62112 TCCTTTTGAATGTTGTAATCAGAAAGAGTT--CTACCATCTTCTAATTGCTTACCAGCAA 62055 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | || | ||| || || |||| ||| | ||||||||| || || || || | Sbjct 62054 AAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACAT 61995 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| | ||||| || || | ||||| ||||| || || | ||||| | Sbjct 61994 TTTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGTTAAAGTCTTAA 61935 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 61934 CGAAGATTTGCAT 61922 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||||| ||||||||||| | ||||| | | || || | ||||| || |||| Sbjct 63480 TCCTTTTGAATGTTGTAATCAGAAAGAGTT--CTACCATCTTCTAATTGCTTACCAGCAA 63423 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | || | ||| || || |||| ||| | ||||||||| || || || || | Sbjct 63422 AAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTGACAT 63363 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| | ||||| || || | ||||| ||||| || || | ||||| | Sbjct 63362 TTTCAATGGTGTCAGAAGATTCAACTTCAAGAGTAATAGTCTTACCAGTTAAAGTCTTAA 63303 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 63302 CGAAGATTTGCAT 63290 >seq1259 Length=61445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||| || | ||||| | || || || | || || || || || Sbjct 16834 CCTTTTGGATGTTGTAGTCAGAAAGAGTT--CTGTCATCTTCTAATTGTTTACCAGCGAA 16891 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || ||||| || ||||||| || | |||||| ||||| ||||| | ||| | | Sbjct 16892 AATTAAACGTTGTTGATCTGGTGGAATACCTTCTTTTTCTTGAATCTTGTTCTTAACATT 16951 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || | |||| || || ||||| | || || |||||||| || ||||| || || Sbjct 16952 GACAATACTATCGGAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTAAC 17011 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 17012 GAAAATTTGCAT 17023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982419350323