Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq11881 203 3e-47 seq14752 150 2e-31 >seq11881 Length=132943 Score = 203 bits (224), Expect = 3e-47 Identities = 492/738 (67%), Gaps = 13/738 (2%) Strand=Plus/Plus Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || ||||| || || || || || || || | || || || | |||||||||||||| Sbjct 44558 ACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTCCATGAAATCAAAG 44617 Query 16748 GGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 || |||| || || || |||||| | | || || || | || | ||| || || | Sbjct 44618 GGGTTAGAGGCATTGTAA--ATTTTATCGAAGCCGAGGGCGACCATGAGTCTGTCAGCAA 44675 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 ||||||| || ||||||||||| | | | |||||| || |||||| || || | || Sbjct 44676 CAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGATTAACAGGCAAAG 44735 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTT 16925 | || ||||| ||| |||||| || |||| || || || || || || || | Sbjct 44736 CGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATGCTCTTTACACGCT 44795 Query 16926 CCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATC 16985 | | ||| || || | || ||||| |||||| ||||| || || ||| ||| | | Sbjct 44796 CTTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAGTCGGTATGAAGGC 44855 Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||| | ||| | ||| |||||||| |||||||| ||||| || || |||| Sbjct 44856 CCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATGAGGCCGCGCTTCT 44915 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | ||| || || || || ||||| ||||| ||||||| ||||| | Sbjct 44916 TGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCGACGGCAGCAAAAG 44975 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | | ||||| ||| || | | || ||| | |||||||| |||| || | Sbjct 44976 CAACTAATCTTTCAGCAAA---AGAATCATTGCCAGAGATCCATTTGAAGGCCCAGTCAG 45032 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTC--CTG 17223 | ||| ||| || || || ||||| ||||| | ||| | |||| ||||| | Sbjct 45033 CCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATCTCCTTTTCAGCGC 45092 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 || || | ||||| || || || | || ||||| | || | || ||||| || || Sbjct 45093 TA--TCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATGAATGTTTTCAAT 45150 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343 ||| || || || || || || ||| |||||| | || | ||||| | | || Sbjct 45151 GGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACTTCATCACAAAAGTT 45210 Query 17344 TTCCGCTAGATTTTCGTTCACGATGCCGTC-GCTCGCGGCGAAAAACGCCAATATATGCT 17402 || | | || |||||||| || | || || || | || || |||||||| | | | Sbjct 45211 TTGCACCAGGTTTTCGTTTACAACACCATCAGCAC-TAGCAAAGAACGCCAACACACGAG 45269 Query 17403 TAATGAAATATTTTTCGT 17420 || || ||| |||||| Sbjct 45270 AGATAAAGTATCTTTCGT 45287 >seq14752 Length=160396 Score = 150 bits (166), Expect = 2e-31 Identities = 491/755 (65%), Gaps = 16/755 (2%) Strand=Plus/Minus Query 16630 ATCCAATGAAAATGTGTTA---TCTTGTTTATGA---ACAACACCCATTCTTTGGTAATC 16683 |||||| ||||| |||| |||| |||| | | |||||| | ||| ||||| Sbjct 138116 ATCCAAAGAAAA---GTTACGGTCTTCTTTACTAGACATAACACCGGCACGTTGATAATC 138060 Query 16684 GCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATC 16743 ||| || ||||| |||||||||||||| || | | ||| || |||||| ||||| Sbjct 138059 AGAAACACGCTTTTCAAAAAAGTTAGTTTTTCCTTGCAAAGAAATCAGCTCCATAAAATC 138000 Query 16744 AAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCG 16802 ||| || || | | | ||| |||||| | | || || | | | | || | Sbjct 137999 AAAGGGGTTTGAGACATTGTAAT-TTTTAGGGAAACCAAGAGATACCAAGAGACGGTCGG 137941 Query 16803 CTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAA 16862 | |||||| | ||||||||||| || | | |||||| || || | ||| || |||| Sbjct 137940 CAACAAATCTAACGTATTGGCACATCAACTTGTCGTTCATACCAATTAAACGCACAGGAA 137881 Query 16863 GAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTC 16922 ||| || | || || | || || ||||||| || | ||||| | ||| Sbjct 137880 GAGAATCATTAAAGTATGACTCTTCGATCTCAACCGCCTCAGTGATAATTTGAAGAACAG 137821 Query 16923 GTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTA 16982 ||| | || || || | | ||| | ||||| || ||| | ||||| ||||| Sbjct 137820 TTTCATGTGAAGGCTGATCAATCAAATGATGAAACAAGAGGCATCCAAAATCAGCATGTA 137761 Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || || || | | || | ||| ||||||| ||||| || ||||| || || | Sbjct 137760 GGCCTTCATCACGAGTAATGAATTCATTAGAAAGAGTCAAACCAGGCATTAAACCACGCT 137701 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | |||||| || | ||| ||||| ||||||||||| |||||||| || | |||| Sbjct 137700 TCTTGAGCCAAAAGATAGAGGCAAACGATCCAGAAAAGAAGATACCCTCCACAGCAGCAA 137641 Query 17103 ACGCGATTAATCGTTCGGCGTACGTCGCGT---CTTTGTTACGAATCCATTTCTGCACCC 17159 | || | | || | | | | || || ||| |||||||| ||| Sbjct 137640 AAGCAACAATACGGACACCAAAAGGTTGGTTTGATTCATTAGAGATCCATTTGAAAGCCC 137581 Query 17160 ACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTT 17219 | | || || | ||| ||| | || ||||| ||||| |||||||| ||||| | Sbjct 137580 AGTTAGCCTTATCCTTAATGACAGGAATGGTTTCGATGGCATTAAATAAGAATTCTTTCT 137521 Query 17220 CCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 | ||| || | || || |||||||| | ||| ||||||||| ||||| |||||| Sbjct 137520 -CAATAGAATCTTTAATGTAAGTATCGATCAATAGCGAGTACATTTCAGAGTGAATGTTC 137462 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 || || |||||||| ||||| ||||| || || |||| | ||||| || || Sbjct 137461 TCAATCATGATCTGAAAACCGTAGAAGCACTTTGCCTCGGCTACCTTGACTTCATCGCAG 137402 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || || | | ||||| || || || || || || Sbjct 137401 AAGTTTTTCACCAGATTCTCATTGACAATACCATC 137367 Score = 145 bits (160), Expect = 8e-30 Identities = 561/875 (64%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 16675 TTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTC 16734 ||||||||| ||| || ||||| || ||||| || || || | || || || || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 16735 CATGAAATCAAAAGGATTAGTAGCTGAAAATATT--TTAGAGTACCCCAGTTCGGCGATT 16792 ||| |||||||| ||||||| | | | ||| | || | | | || || | || Sbjct 135938 CATAAAATCAAAGGGATTAGAAAC--ATTATAGTGCTTGGGGAAACCAAGAGAAACCATC 135881 Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 | | ||| || |||||||| | || || ||||||| ||| ||||| || || | Sbjct 135880 AGACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAAT 135821 Query 16853 CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || || | ||||| | ||||| | ||||||||| | || || ||| | | ||| Sbjct 135820 CTAACGGGCAATGCTTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCAAAATC 135761 Query 16913 CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAG-ATGT--TTAAACATCAGACATGCG 16969 | ||| ||| | ||| ||| || |||| |||| | || | ||||| | Sbjct 135760 TGAAGAACAGTTTCATGGGAAGGT---TGATTAATCATGTGGTGGAATAAAAGACAGCCA 135704 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| ||| | || || || | | || | || || || | ||||| || ||| Sbjct 135703 AAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGGC 135644 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || || | |||||| || | ||| ||||| || |||||||| | ||| Sbjct 135643 ATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACCT 135584 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC---TTTGTTACGAATC 17146 |||| ||||| || | ||| ||||| | | || || ||| ||| Sbjct 135583 TCGATAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGATC 135524 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 ||||| |||| || || || ||| || | || || |||||||| ||||| Sbjct 135523 CATTTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAAC 135464 Query 17207 AATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCG 17266 || || ||||| | || | |||||||||||||| | |||| ||||||||| Sbjct 135463 AAAAATTCCTTTTCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACATTTCA 135404 Query 17267 GAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGA 17326 ||||| |||||||| || |||||||| |||||||| ||| || || |||| | | Sbjct 135403 GAGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTATCTTA 135344 Query 17327 ACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 ||||| || | || | | ||| |||||| || |||||||| || | || ||| Sbjct 135343 ACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAAA 135284 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG---AACGCGCCAGTCC 17443 || || |||| | | ||||| | ||| ||| | || | ||| || Sbjct 135283 AAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATCA 135224 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 || |||||||||| ||| || ||||| ||||| || ||| | || || || Sbjct 135223 AGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTTG 135164 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || | | |||||| |||| ||||| || ||||| Sbjct 135163 TAAAACTCCCAAATTTCATGGTATTTGATAGGGAA 135129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517444439243160