Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq11881 190 2e-43 seq14752 120 3e-22 >seq11881 Length=132943 Score = 190 bits (210), Expect = 2e-43 Identities = 477/722 (66%), Gaps = 7/722 (1%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| || ||| || ||||| || ||||| || || ||||| | | || || | || Sbjct 44545 TTGATAGTCAGAGACACGTTTCTCAAAGAAATTGGTCTTTCCTTGAAGCGAAATCATGTC 44604 Query 15973 CATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 ||| ||||||||||| |||| || || || || ||| | | || || | | Sbjct 44605 CATGAAATCAAAGGGGTTAGAGGCATTGTAA--ATTTTATCGAAGCCGAGGGCGACCATG 44662 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 | ||| || || |||||||| || ||||| ||||| | || | || || || ||||| Sbjct 44663 AGTCTGTCAGCAACAAATTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCAATAAGA 44722 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | ||| | || || |||| ||| || || |||| || ||| ||||| Sbjct 44723 TTAACAGGCAAAGCGTCAGTCAAGAATTCTTGCTCAATTTCAACAGCCTCTGCGATGATG 44782 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 | | || || || || || | || || || |||||| ||||| || ||| Sbjct 44783 CTCTTTACACGCTCTTGGGAGGGGGTTTTCTTCAGATGGGTAAACAAGAGACAGGCAAAG 44842 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 ||| ||| || || ||||| | ||| | ||| || ||||| || ||||| ||||| Sbjct 44843 TCGGTATGAAGGCCCTCGTCACGAGAGATCAATTCATTAGAAAAGGTCAACCCAGGCATG 44902 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 || || ||||| | |||||| || | |||||||| || || ||||| ||||| || Sbjct 44903 AGGCCGCGCTTCTTGAGCCAGAAAATGGAGGCAAATGAGCCTGAGAAGAAGATACCTTCG 44962 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTC 16390 || | |||||||| | ||||| ||| || | || ||| || | |||||||| Sbjct 44963 ACGGCAGCAAAAGCAACTAATCTTTCAGCAAA---AGAATCATTGCCAGAGATCCATTTG 45019 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450 |||| || || ||| || ||||| || ||||| ||||| | ||| | || Sbjct 45020 AAGGCCCAGTCAGCCTTTCTCTTGATACAGGGGATGGTTTCAATGGCGTCAAAGAGCATC 45079 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 || ||||| |||| | ||||| || ||||||| | |||||| | || | || Sbjct 45080 TCCTTTTCAGCGCTATCCTTGATATAAGTGTCAATCAAAAGACTGTATGTCTCAGCATGA 45139 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 ||||| || ||||| || || || |||||||| ||| || || | || | ||||| Sbjct 45140 ATGTTTTCAATGGCGATTTGGAAACCATAGAAACATTTGGCTTCAGGAATCTTGACTTCA 45199 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 | |||| || | ||||||| || || || | ||| ||| |||||| |||||| Sbjct 45200 TCACAAAAGTTTTGCACCAGGTTTTCGTTTACAACACCATCAGCACTAGCAAAGAACGCC 45259 Query 16631 AA 16632 || Sbjct 45260 AA 45261 >seq14752 Length=160396 Score = 120 bits (132), Expect = 3e-22 Identities = 558/877 (64%), Gaps = 19/877 (2%) Strand=Plus/Minus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 |||||||||| ||| || ||||| |||||||| || ||||| | | || || || Sbjct 135998 TTGGTAATCAGAAACACGCTTTTCAAAGAAGTTTGTCTTTCCTTGAAGGGAAATCAAATC 135939 Query 15973 CATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA 16032 |||||||||||||||||||| | | | | ||| | | | || || | ||| | Sbjct 135938 CATAAAATCAAAGGGATTAGAAACATTATAGTGCTTGGGGAAACCAAGA---GAAACCAT 135882 Query 16033 T---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 | ||| || |||||||| | || |||||||||| || ||| || || || | Sbjct 135881 CAGACGATCAGCAACAAATTCGACGTACTGACACATTAGTTCATCATTCATACCGATCAA 135822 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || || || | |||| | | ||||| ||| |||||| | || || || | | | Sbjct 135821 TCTAACGGGCAATGCTTCTTTGAAAAAACTTTGCTCTATCTCGACGGCCTCCGTCA--AA 135764 Query 16150 ATCGGTGGCTCGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 ||| | | | |||||| || ||| || | | ||| | || | ||||| | Sbjct 135763 ATCTGAAGAACA-GTTTCATGGGAAGGTTGATTAATCATGTGGTGGAATAAAAGACAGCC 135705 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || ||| || ||||| || | | || | || ||||| | ||| || || || Sbjct 135704 AAAATCAGCATGAAGACCTTCATCACGAGTAATGAACTCATTGGAGAGAGTCAAACCAGG 135645 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 |||| || || || || | ||| || || | ||||| || || |||||||| | ||| Sbjct 135644 CATTAAACCACGCTTTTTGAGCCAAAAGATAGAGGCAAACGAGCCTGAAAAGAAGACACC 135585 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG-TAGCATC--TTTATTACGAAT 16383 || | | ||||| || | ||| | ||| | | | | | || || || Sbjct 135584 TTCGATAATAGCAAAGGCACAGATACGTACGGCGAAAGGTTGGTTGGATTCGTTGGCGAT 135525 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 |||||| |||| || || || || || | || || |||||||| ||||| Sbjct 135524 CCATTTGAAAGCCCAATCAGCCTTGGTCTTGATTTGAGGAATAGTCTCTATGGCATTAAA 135465 Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTC 16503 ||| || ||||| ||| | ||||||||||| |||| || ||||||||| Sbjct 135464 CAAAAATTCCTTTTCAACGGGATCCTTGATATACGTATCGATCAATAGGGAGTACATTTC 135405 Query 16504 TGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTG 16563 ||||| |||||||| || |||||||| || || || ||| |||||| |||| | Sbjct 135404 AGAGTGAATGTTCTCAATCATGATCTGAAAACCGTAAAAACATTTAGCCTCGCCTATCTT 135345 Query 16564 TACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 ||||| || |||| | | | | || ||||| ||||| || || | ||||| Sbjct 135344 AACTTCATCGCAAAAGTTTGCAACTAAATTTTCATTGACGATGCCATCCGAAGTTGCAAA 135285 Query 16624 AAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT---ATGCCAATC 16680 ||| || |||| | ||||| | ||| || | || | | |||||| Sbjct 135284 AAAAGCTAATACACGGCCGATGAAGTGGCGTTCATCCTTGTTCAGCTTTTCCTCCCAATC 135225 Query 16681 TTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTT 16740 || |||||||||| ||| || ||||| ||||| || ||| | || || || Sbjct 135224 AAGTATGTCTTTGGATAAATCAACCTCTTCCACAGTCCAGAACGAAGCTTCGGCTTTCTT 135165 Query 16741 ATACATTTTCCAAATATCATTGTATTGTAT-GGGAAA 16776 || | | |||||| |||| ||||| || |||||| Sbjct 135164 GTAAAACTCCCAAATTTCATGGTATTTGATAGGGAAA 135128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511314437662840