Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13988 192 4e-44 >seq13988 Length=264055 Score = 192 bits (212), Expect = 4e-44 Identities = 502/762 (66%), Gaps = 39/762 (5%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||| ||| | ||| | || | || || || || ||| ||| ||||||| || Sbjct 240172 TTAAACAGACATTTTCATGTCAAGTTTACCATGAGGATTGTAGCCTTCAAATATAAAATC 240113 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || || |||| |||||||||| | | || | | ||| | ||||| ||||| Sbjct 240112 TTCAACTGTAAAATCATCAATGCTAGTGATCTTGCGATTAAACTTTAGTGTAGGAAAATT 240053 Query 101653 TCTAGGAGTTCGCGTCAACTGCATT--TTAAGAGCATCAATGTGATCTACATAGATGTGA 101710 ||| || ||| ||| | | || || || ||||| || |||||||| || | || Sbjct 240052 TCTTGG--TTCCCGTTCAATTTGTTCCTTCAGGGCATCTATATGATCTACGTACACATGG 239995 Query 101711 GCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATG 101770 | ||| || || ||||| || ||||||||||| | | | ||||||||||||||||| Sbjct 239994 GTATCACCCATGGTATGTATGAACTCTCCAGGATCCAAGTCTGTGACATGAGCAATCATA 239935 Query 101771 CAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGAT 101830 | ||| || || | ||| || ||||| || ||||| || || | |||||||| ||| Sbjct 239934 CGAGTCAATAGGGCATAACTTGCAATATTGAATGGAACGCCCAGGCCCATATCGCAAGAT 239875 Query 101831 CTTTGATACAGTTGACAGGAAAGCT---------TTCCATC------------ACAGACA 101869 || ||||||| |||||| || | | || || || |||| Sbjct 239874 CTCTGATACAAAACACAGGACAGTTTAGCGCGGCTACCGTCAGCAGGAGGAGTACTGACA 239815 Query 101870 TAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTC 101929 |||||||||| || ||||||||||||| || |||| | || ||||||| | |||| Sbjct 239814 TAAAATTGACAGAAAGCATGACAAGGCGGTAAAGCCATGCTGGGGATGTCTGCAGGATTC 239755 Query 101930 CAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGT 101989 ||||| | || | || | | ||| || || || | || || | ||||| | || | Sbjct 239754 CAAGCGCTCAAAATGATACGGCGATCGGTGGGATTATTCTTGATCTTTTCAATTATCTCT 239695 Query 101990 TTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCG-CCCAA-CACCTTTATATTCTGCT 102046 | | ||| ||||| |||| ||| |||| || | | | ||| || | ||||| || Sbjct 239694 TGCAGTTGATCAACGCCTTGCCCTGTATAGTCTGTGTCGCAATCAAC---ATATTTGGCA 239638 Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCAT----CTCTGTC 102102 ||||| || | ||| ||||| |||||||| || || | ||| ||||| | | |||| Sbjct 239637 CCGAAGTGGCGCCATTGAAAACCATACACTGGCCCCAAATCACCTTCTTTGCGATGTGTC 239578 Query 102103 ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC 102162 |||||||| ||||| | || | || ||||| ||||||| || | || Sbjct 239577 ----AAACCAAGCTTATCCAGGTATTCGCGGGAGCCATTGCCATCCCAGATTTTGACATT 239522 Query 102163 AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAAC 102222 | | | || | ||| | |||| ||| | | |||||||| | ||| || || Sbjct 239521 ACGTTCGCTTAAATGCTTGGAATTAGTATCTCCACGAACAAACCACAGTAATTCCTCGAC 239462 Query 102223 AACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 |||||||| ||| || | ||| ||||| || || || || Sbjct 239461 TACACCTCTGTGAAACACACGCTTTGTAGTCAAGAGGGGGAA 239420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361182354213887