Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15377 125 7e-24 seq14752 123 3e-23 seq11881 107 2e-18 seq513 96.9 4e-15 seq2291 89.7 5e-13 >seq15377 Length=116332 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || || || |||||||||||||| | || || ||| | Sbjct 81066 AAATATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATC 81125 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 ||||||| | | | ||||| |||| || | |||||||| || || || | || Sbjct 81126 ATCCGACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 81185 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| | |||| || || ||||| | || |||| |||| | | ||||| Sbjct 81186 CCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGCTCGTTGTCAGACTA 81245 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| |||||||| | ||||| ||||||||| Sbjct 81246 CAACATTCAGAAGGAATCAACGCTTCATCTAGTG 81279 >seq14752 Length=160396 Score = 123 bits (136), Expect = 3e-23 Identities = 396/608 (65%), Gaps = 10/608 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || || || ||||| ||| ||||||| || |||||| || || ||| | ||| Sbjct 135105 GAAAATCCTCGCCGATTCTGCCTTTTCCCTATCAAATACCATGAAATTTGGGAGTTTTAC 135164 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || ||||| || ||||||||||| || || ||||| || | ||||| |||| Sbjct 135165 AAGAAAGCCGAAGCTTCGTTCTGGACTGTGGAAGAGGTTGATTTATCCAAAGACATACTT 135224 Query 116711 GACTGGGAG----CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTT 116766 || |||||| || ||||| | | || ||||| |||||| | || | || || Sbjct 135225 GATTGGGAGGAAAAGC-TGAACAAGGATGAACGCCACTTCATCGGCCGTGTATTAGCTTT 135283 Query 116767 TTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCG-AGCGTTTCGCTCAGGAGG 116825 ||| || | || ||||||||||| || ||| | || | | ||| || | || | Sbjct 135284 TTTTGCAACTTCGGATGGCATCGTCAATGAAAATTTAGTTGCAAACTTTTGC-GATGAAG 135342 Query 116826 TGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACT 116885 | || | | |||||| || || ||||| ||||||||| || |||||| | |||| Sbjct 135343 TTAAGATAGGCGAGGCTAAATGTTTTTACGGTTTTCAGATCATGATTGAGAACATTCACT 135402 Query 116886 CGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT 116945 | |||||||| || | ||||| ||||| | | | | || ||| || Sbjct 135403 CTGAAATGTACTCCCTATTGATCGATACGTATATCAAGGATCCCGTTGAAAAGGAATTTT 135462 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || ||||| ||||| || || |||| ||||| || ||||| | | Sbjct 135463 TGTTTAATGCCATAGAGACTATTCCTCAAATCAAGACCAAGGCTGATTGGGCTTTCAAAT 135522 Query 117006 GGATCGCC--GGCAGAGAGGCCGCC-TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 |||||||| | | | | || |||| || || | ||||| || ||| Sbjct 135523 GGATCGCCAACGAATCCAACCAACCTTTCGCCGTACGTATCTGTGCCTTTGCTATTATCG 135582 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 | || ||||||||||| ||| || ||| | || ||||||||||| || || || | | Sbjct 135583 AAGGTGTCTTCTTTTCAGGCTCGTTTGCCTCTATCTTTTGGCTCAAAAAGCGTGGTTTAA 135642 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACT 117182 |||| || ||||| || ||| ||| |||| | | || || ||||| ||| || | Sbjct 135643 TGCCTGGTTTGACTCTCTCCAATGAGTTCATTACTCGTGATGAAGGTCTTCATGCTGATT 135702 Query 117183 TTGCCTGT 117190 ||| |||| Sbjct 135703 TTGGCTGT 135710 >seq11881 Length=132943 Score = 107 bits (118), Expect = 2e-18 Identities = 188/269 (70%), Gaps = 11/269 (4%) Strand=Plus/Minus Query 116931 AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA-GGCC 116989 |||||| |||| |||| ||||||| || || || || || |||| ||||| ||| Sbjct 45083 AGGAGATGCTC--TTTG----ACGCCATTGAAACCATCCCCTGTATCAA-GAGAAAGGCT 45031 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| | |||||| | |||| || | || | || | | || || Sbjct 45030 GACTGGGCCTTCAAATGGATCTCTGGCAATGATTCT---TTTGCTGAAAGATTAGTTGCT 44974 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || |||||||| || ||||||| || ||| || ||| |||| || ||||||||| Sbjct 44973 TTTGCTGCCGTCGAAGGTATCTTCTTCTCAGGCTCATTTGCCTCCATTTTCTGGCTCAAG 44914 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || |||||||||||||| || |||| || || || | ||||| | |||||||| Sbjct 44913 AAGCGCGGCCTCATGCCTGGGTTGACCTTTTCTAATGAATTGATCTCTCGTGACGAGGGC 44854 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 || ||| ||||||||||||| | |||| Sbjct 44853 CTTCATACCGACTTTGCCTGTCTCTTGTT 44825 >seq513 Length=239887 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || |||||||| || || | || || ||| | ||| Sbjct 208302 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAAACTATTACGTTAGAAGTTGAATCTACC 208361 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | ||||| |||| || | ||||| || ||||| ||| | ||||| Sbjct 208362 GATATGATTGATAATG-TCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 208420 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || || | ||| ||||| || | || || | || || || |||||||| Sbjct 208421 ACAACGTCTTATTTTCGCCGGCAAGCAATTAGAAGATGGTCGTACTCTTTCAGACTACAA 208480 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||| | || || ||| Sbjct 208481 TATCCAGAAGGAATCTACTCTTCAT 208505 >seq2291 Length=180 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||||||||| | || || ||| | || Sbjct 2 ATGCAAATTTTCGTCAAGACACTTACTGGCAAAACCATCACTTTGGAGGTAGAATCATCC 61 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||||| | | | ||||| |||| || | |||||||| || || || | |||||| Sbjct 62 GACAGAATTGATAATGTCAAGCAAAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 121 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| | |||| || || ||||| | || |||| |||| Sbjct 122 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGACGGGCGC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515118493967120