Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasitella_20parasitica_20[genbank_20GCA_5F000938895.1_202015-01- 16] 15,637 sequences; 44,910,645 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq13988 149 4e-31 >seq13988 Length=264055 Score = 149 bits (164), Expect = 4e-31 Identities = 451/694 (65%), Gaps = 31/694 (4%) Strand=Plus/Minus Query 96962 CTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGG 97021 || ||||||||||||| | ||||| | |||||||||||| || ||| || | Sbjct 240107 CTGTAAAATCATCAATGCTAGTGATCTTGCGATTAAACTTTAGTGTAGGAAAATTTCTTG 240048 Query 97022 GAGTTCGCGT--AAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATC 97079 |||| ||| || || || | || ||||| || |||| || || | || | ||| Sbjct 240047 --GTTCCCGTTCAATTTGTTCCTTCAGGGCATCTATATGATCTACGTACACATGGGTATC 239990 Query 97080 TCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGT 97139 || | || || || || ||||||||| | || || |||||||| || ||||||| ||| Sbjct 239989 ACCCATGGTATGTATGAACTCTCCAGGATCCAAGTCTGTGACATGAGCAATCATACGAGT 239930 Query 97140 TAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTG 97199 ||||| | ||| || ||||| || || || || || || |||||||| ||||| || Sbjct 239929 CAATAGGGCATAACTTGCAATATTGAATGGAACGCCCAGGCCCATATCGCAAGATCTCTG 239870 Query 97200 ATATAACTGACAGGAAAGCT---------TTCCATC------------ACACACATAAAA 97238 ||| || |||||| || | | || || || |||||||| Sbjct 239869 ATACAAAACACAGGACAGTTTAGCGCGGCTACCGTCAGCAGGAGGAGTACTGACATAAAA 239810 Query 97239 CTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC 97298 |||| || ||||||| || || || ||||| | || | ||| ||||||||| Sbjct 239809 TTGACAGAAAGCATGACAAGGCGGTAAAGCCATGCTGGGGATGTCTGCAGGATTCCAAGC 239750 Query 97299 ACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAA 97358 | || | || | | |||||| || || | | || | | |||||||| | | Sbjct 239749 GCTCAAAATGATACGGCGATCGGTGGGATTATTCTTGATCTTTTCAATTATCTCTTGCAG 239690 Query 97359 TTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAAT 97417 |||||||||||||| || ||| | |||| | | | ||||| || || || | Sbjct 239689 TTGATCAACGCCTTGCCCTGTATAGTCTGTG-TCGCAATCAACATATTTGGCACCGAAGT 239631 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | | |||||| || ||||| || || || | || ||||||| | || ||||||| Sbjct 239630 GGCGCCATTGAAAACCATACACTGGCCCCAAATCACCTTCTTTGCGATGTGTCAAACCAA 239571 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT--GCTGC 97535 ||||||| | || | || ||||| ||||||| || | ||| | | ||| Sbjct 239570 GCTTATCCAGGTATTCGCGGGAGCCATTGCCATCCCAGATTTTGACATTACGTTCGCTTA 239511 Query 97536 AAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCT 97595 || | ||| | |||| ||| | | |||||||| ||||| || || |||||||| Sbjct 239510 AA--TGCTTGGAATTAGTATCTCCACGAACAAACCACAGTAATTCCTCGACTACACCTCT 239453 Query 97596 CCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 ||| || | ||| || || ||||| || ||| Sbjct 239452 GTGAAACACACGCTTTGTAGTCAAGAGGGGGAAA 239419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346717911314090